fc478517ac
Backing up current dataset
1 year ago
d912408456
Got counts of competing drugs back
1 year ago
2488cceebc
Merge branch 'main' of https://git.youainti.com/youainti/ClinicalTrialsDataProcessing
1 year ago
eca4795d2f
Began redoing lost formularies work
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I lost some work on USP formularies and those are crucial for my analysis.
So, I began reworking them. In the process, I:
- Created a new formularies schema and added a table and some views
- new file: Scripts/ConfiguringFormularies.sql
- exported the schema
- new file: Scripts/export_tables.sh
- new file: export/export_data_postgres_materialized_views.sql
- new file: export/export_data_postgres_tables.sql
- new file: export/export_data_postgres_views.sql
- new file: export/output_2025-01-06_export_data_postgres_materialized_views.sql
- new file: export/output_2025-01-06_export_data_postgres_tables.sql
- new file: export/output_2025-01-06_export_data_postgres_views.sql
- new file: Scripts/Extracting Tables Views and MatViews.sql
- created a new checkpoint/backup of my work
- modified: .gitattributes
- new file: containers/AACT_Reloader/backup/aact_db_backup_20250106_184236.sql.gz
- new file: Scripts/Backup_AACT_work.sh
1 year ago
87074aa42b
Worked on error preventing restore
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Turns out that the code for checking if the database was up was wrong. I think I fixed it but am not sure.
1 year ago
3311159ab6
Merge remote-tracking branch 'refs/remotes/origin/main'
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Adjusted some git lfs stuff.
2 years ago
bb374dbde9
Mergeing orign/main and home-pc/main
2 years ago
635cfe42d9
added new data on reasons for terminating trials
2 years ago
79902f400a
added some work on extracting data with LLMs
2 years ago
495955170c
changed data setup path for clarity
2 years ago
de3698052b
Merging work from different computers. FF merge.
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Includes a lot of data and updates to various files.
Merge branch 'main' of ssh://git.youainti.com:3022/youainti/ClinicalTrialsDataProcessing
2 years ago
dfb041d12b
Adding sql that was sitting on home computer
2 years ago
9aaf007791
removed accidental includion of .dbeaver configuration
2 years ago
b4a3cec7e6
Updated modefile
2 years ago
211151e223
added modelfile for llama3.1-extractor:2024-08-28.1
2 years ago
d90539a679
updated data-restoration script. Currently working
2 years ago
142670d08a
added some data that had been left untracked
2 years ago
6a931b3a49
added USP MMG data
3 years ago
1c3d749ef4
added VA and USP DC datasets
3 years ago
ef68adae89
Added backup of the aact_db
3 years ago
a336fb92d9
Linking again after changing remotes
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Merge branch 'main' of https://git.youainti.com/youainti/ClinicalTrialsDataProcessing into main
3 years ago
05a96a3a29
adding scripts
3 years ago
256177e569
Updated to what I am using so far
3 years ago
b7290c271b
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
3 years ago
c4b8484cab
added submission date to extractor
3 years ago
2a9b8349ba
storing local details
3 years ago
9a718f72a0
Adding sql queries that I need for the analysis
3 years ago
e88f450b8c
minor updates
3 years ago
4643351305
minor adjustments to improve workflow
3 years ago
c1f9f6e528
Updated to be able to run as webpage.
3 years ago
277b5b9bd5
Working validation tool
3 years ago
1de1ff9e4a
Minor updates to umls_... to add progress bars. Got the main features of validation running.
3 years ago
47996ba607
updated import-icd10... to use execute_values to speed up insert.
3 years ago
9ac4cffe61
Nearly finished interface to manually review icd-10 codes.
3 years ago
5600ad932d
Got the basics for matching and importing icd->GBD data
3 years ago
d1edac3c4f
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
3 years ago
e2edf1eb6b
created base of umls linking script
3 years ago
c5f3bfcdec
Merging work from other computer into home.
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Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing
3 years ago
12c3c69304
added Glbal burden fo disease data
3 years ago
29644a0ad5
Connected Global Burdens of Disease Data to ICD-10 Codes
3 years ago
123fe3b5e4
Merge completed: Merged working versions from home and office PCs
3 years ago
470dfc2611
got a working merge of the who icd10 and cms icd10cm code spaces. This merge has a single entry for each code, prefering the WHO version when available.
3 years ago
6876779c17
Merged two commits because I initially forgot to include the deleted
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paths.
fixed some paths, added the CMS version of icd10cm, and added the downloaded source for the CMS data
forgot to remove old paths
3 years ago
bbdd7552a8
adding various changed for which I don't remember the details. I'm adding it to avoid loosing it.
3 years ago
4831864805
adjusted paths and started writing something to link GBD and ICD10
3 years ago
6b5a48c77a
added GlobalBurden of Disease connections to ICD-10
3 years ago
2aba3469d3
adding WHO ICD-10 Data
3 years ago
ef7ed7001b
added info for setting up the db from DrugCentral.org
3 years ago
2ec314180f
Merge remote-tracking branch 'refs/remotes/origin/main'
3 years ago
f6b56da261
Got working connection between trials and NDA/ANDA start times
3 years ago
Will King
will king
Will King
Will King