Will King
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211151e223
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added modelfile for llama3.1-extractor:2024-08-28.1
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2 years ago |
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Will King
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d90539a679
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updated data-restoration script. Currently working
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2 years ago |
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Will King
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142670d08a
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added some data that had been left untracked
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2 years ago |
youainti
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6a931b3a49
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added USP MMG data
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3 years ago |
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youainti
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1c3d749ef4
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added VA and USP DC datasets
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3 years ago |
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youainti
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ef68adae89
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Added backup of the aact_db
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3 years ago |
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youainti
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a336fb92d9
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Linking again after changing remotes
Merge branch 'main' of https://git.youainti.com/youainti/ClinicalTrialsDataProcessing into main
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3 years ago |
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will king
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05a96a3a29
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adding scripts
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3 years ago |
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will king
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256177e569
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Updated to what I am using so far
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3 years ago |
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youainti
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b7290c271b
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Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
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3 years ago |
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will king
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c4b8484cab
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added submission date to extractor
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3 years ago |
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youainti
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2a9b8349ba
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storing local details
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3 years ago |
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will king
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9a718f72a0
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Adding sql queries that I need for the analysis
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3 years ago |
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will king
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e88f450b8c
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minor updates
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3 years ago |
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will king
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4643351305
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minor adjustments to improve workflow
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3 years ago |
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will king
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c1f9f6e528
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Updated to be able to run as webpage.
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3 years ago |
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will king
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277b5b9bd5
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Working validation tool
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3 years ago |
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will king
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1de1ff9e4a
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Minor updates to umls_... to add progress bars. Got the main features of validation running.
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3 years ago |
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will king
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47996ba607
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updated import-icd10... to use execute_values to speed up insert.
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3 years ago |
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will king
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9ac4cffe61
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Nearly finished interface to manually review icd-10 codes.
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3 years ago |
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will king
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5600ad932d
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Got the basics for matching and importing icd->GBD data
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3 years ago |
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youainti
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d1edac3c4f
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Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
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3 years ago |
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youainti
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e2edf1eb6b
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created base of umls linking script
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3 years ago |
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will king
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c5f3bfcdec
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Merging work from other computer into home.
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing
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3 years ago |
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will king
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12c3c69304
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added Glbal burden fo disease data
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3 years ago |
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youainti
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29644a0ad5
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Connected Global Burdens of Disease Data to ICD-10 Codes
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3 years ago |
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youainti
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123fe3b5e4
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Merge completed: Merged working versions from home and office PCs
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3 years ago |
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youainti
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470dfc2611
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got a working merge of the who icd10 and cms icd10cm code spaces. This merge has a single entry for each code, prefering the WHO version when available.
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3 years ago |
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youainti
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6876779c17
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Merged two commits because I initially forgot to include the deleted
paths.
fixed some paths, added the CMS version of icd10cm, and added the downloaded source for the CMS data
forgot to remove old paths
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3 years ago |
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youainti
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bbdd7552a8
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adding various changed for which I don't remember the details. I'm adding it to avoid loosing it.
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3 years ago |
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youainti
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4831864805
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adjusted paths and started writing something to link GBD and ICD10
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3 years ago |
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youainti
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6b5a48c77a
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added GlobalBurden of Disease connections to ICD-10
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3 years ago |
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youainti
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2aba3469d3
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adding WHO ICD-10 Data
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3 years ago |
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will king
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ef7ed7001b
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added info for setting up the db from DrugCentral.org
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3 years ago |
Will King
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2ec314180f
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Merge remote-tracking branch 'refs/remotes/origin/main'
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3 years ago |
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Will King
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f6b56da261
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Got working connection between trials and NDA/ANDA start times
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3 years ago |
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Will King
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ed49d8728a
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Update 'README.md'
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3 years ago |
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youainti
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39397cc224
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reorganized python scripts into package, added requisit sql, and added shell scripts to notify me when the systems are up again.
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3 years ago |
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youainti
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804a90c247
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lots of updates while integrating rxnav and aact into one dockerfile
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3 years ago |
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youainti
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8dbf4e8c2e
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removed unused files, began adjusting docker-composes so that they will work together.
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3 years ago |
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youainti
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1a106a553e
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moved containers to single location, ignored raw data
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3 years ago |
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youainti
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f6f687fff5
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removed old code (orangebook and old rxnorm_mappings) and adjusted the AACT_downloader to use a local directory when launching
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3 years ago |
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youainti
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016a449258
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merged the two settings
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3 years ago |
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youainti
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091fd63366
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committing results
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3 years ago |
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will king
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bbf8c77e6d
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more work on linking market data
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3 years ago |
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youainti
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4283719d3d
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added stashed changes
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3 years ago |
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youainti
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52f8152afd
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merging results
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3 years ago |
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youainti
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23826fb576
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recording local changes
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3 years ago |
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will king
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966171c840
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checking in incremental work. Figured out how to get dates.
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3 years ago |
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will king
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f5788051f7
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removed (reasonably successful) attempt at using API. I favor migrading db tables
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3 years ago |