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@ -6,7 +6,9 @@
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data_link := "https://ctti-aact.nyc3.digitaloceanspaces.com/27grtsnhtccplxapj2o8ak9aotvv"
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data_link := "https://ctti-aact.nyc3.digitaloceanspaces.com/27grtsnhtccplxapj2o8ak9aotvv"
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data_file := "postgres_data.dmp"
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data_file := "2022-12-23_postgres_data.zip"
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data_path := "./AACT_downloader/aact_downloads"
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data_filepath := data_path / data_file
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#must match the 'container name: aact_db' in the docker-compose.yaml
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#must match the 'container name: aact_db' in the docker-compose.yaml
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docker_container := `docker container ls -a | grep aact_db | cut -f 1 -d " " | tr "\n" " "`
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docker_container := `docker container ls -a | grep aact_db | cut -f 1 -d " " | tr "\n" " "`
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@ -17,6 +19,7 @@ check-status:
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python --version
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python --version
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curl --version
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curl --version
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echo "current docker containers:{{docker_container}}"
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echo "current docker containers:{{docker_container}}"
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#Setup the AACT container
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#Setup the AACT container
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setup-containers:
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setup-containers:
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@echo "Check for downloaded data"
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@echo "Check for downloaded data"
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@ -48,7 +51,9 @@ setup-docker-network:
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#Download the AACT data
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#Download the AACT data
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download-aact-data:
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download-aact-data:
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curl {{data_link}} > ./AACT_downloader/aact_downloads/ {{data_file}}
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curl {{data_link}} > ./AACT_downloader/aact_downloads/{{data_file}}
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unzip {{data_filepath}} -d {{data_path}}
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rm {{data_filepath}}
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#Download and parse historical clinical trials data
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#Download and parse historical clinical trials data
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download-parse-historical-ct:
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download-parse-historical-ct:
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