diff --git a/justfile b/justfile index 36cce2d..07e169f 100644 --- a/justfile +++ b/justfile @@ -6,7 +6,9 @@ data_link := "https://ctti-aact.nyc3.digitaloceanspaces.com/27grtsnhtccplxapj2o8ak9aotvv" -data_file := "postgres_data.dmp" +data_file := "2022-12-23_postgres_data.zip" +data_path := "./AACT_downloader/aact_downloads" +data_filepath := data_path / data_file #must match the 'container name: aact_db' in the docker-compose.yaml docker_container := `docker container ls -a | grep aact_db | cut -f 1 -d " " | tr "\n" " "` @@ -17,6 +19,7 @@ check-status: python --version curl --version echo "current docker containers:{{docker_container}}" + #Setup the AACT container setup-containers: @echo "Check for downloaded data" @@ -48,7 +51,9 @@ setup-docker-network: #Download the AACT data download-aact-data: - curl {{data_link}} > ./AACT_downloader/aact_downloads/ {{data_file}} + curl {{data_link}} > ./AACT_downloader/aact_downloads/{{data_file}} + unzip {{data_filepath}} -d {{data_path}} + rm {{data_filepath}} #Download and parse historical clinical trials data download-parse-historical-ct: