Got all references in the data section working

claude_rewrite
Will King 1 year ago
parent 325ff5bade
commit 9aea1b79df

@ -131,11 +131,13 @@ drug compound may be packaged in multiple ways, e.g. boxes with different
numbers of blister packs. numbers of blister packs.
These SPLs are made available for download so that they can be integrated These SPLs are made available for download so that they can be integrated
into patient health systems to improve patient safety into patient health systems to improve patient safety
\cite{indexingsplfactsheet_}. \cite{usfda_splfactsheet_2023}.
The FDA also published additional data in the NDC SPL Data Elements (NSDE) file. The FDA also published additional data in the NDC SPL Data Elements (NSDE) file.
This file contains some of the data from the SPL files, as well as the dates This file contains some of the data from the SPL files, as well as the dates
when each product was approved for sale and when it was removed from the market. when each product was approved for sale and when it was removed from the market.
This summary of SPLs is what I used to find which drugs were approved
to be on the market at a given date.
%Structured Product Labels and dates of marketing %Structured Product Labels and dates of marketing
% Key features % Key features
@ -186,7 +188,7 @@ In each section below I briefly describe each terminology, its contents, and use
The Medical Subject Headings (MeSH) Thesaurus is produced and maintained by the National The Medical Subject Headings (MeSH) Thesaurus is produced and maintained by the National
Library of Medicine. Library of Medicine.
It is used to index subjects in various NLM publications including PubMed It is used to index subjects in various NLM publications including PubMed
\cite{medicalsubjectheadingshomepage_}. \cite{usnlm_meshhomepage_2023}.
The AACT database contains a table that links clinical trials' clinical conditions The AACT database contains a table that links clinical trials' clinical conditions
and drug names to terms in the MeSH thesaurus. and drug names to terms in the MeSH thesaurus.
As this contains a standardized nomenclature, it simplified much of the As this contains a standardized nomenclature, it simplified much of the
@ -216,7 +218,7 @@ The one I chose to use was a MariaDB database that backs a service called RxNav
provided by the National Library of Medicine (NLM). provided by the National Library of Medicine (NLM).
The NLM provides scripts to set up and host the backing databases on your The NLM provides scripts to set up and host the backing databases on your
own servers own servers
\cite{usnlm_rxnaviabox_2023}. \cite{usnlm_rxnavinabox_2023}.
After setting up the local server, I wrote a python program to export After setting up the local server, I wrote a python program to export
the data from the RxNorm database and import it into the AACT Database. the data from the RxNorm database and import it into the AACT Database.
This was required because the former uses a MariaDB database server This was required because the former uses a MariaDB database server

@ -637,11 +637,6 @@
file = {/home/will/Zotero/storage/23DGMZ5X/en.html} file = {/home/will/Zotero/storage/23DGMZ5X/en.html}
} }
@misc{indexingsplfactsheet_,
title = {Indexing {{Spl Fact Sheet}}},
file = {/home/will/Zotero/storage/KAHW2ABD/Indexing-SPL-Fact-Sheet.pdf}
}
@misc{interviewadamgeorge_2023, @misc{interviewadamgeorge_2023,
title = {Interview with {{Adam George}}.}, title = {Interview with {{Adam George}}.},
date = {2023-05-05} date = {2023-05-05}
@ -812,16 +807,6 @@
isbn = {978-0-367-13991-9} isbn = {978-0-367-13991-9}
} }
@online{medicalsubjectheadingshomepage_,
type = {Product, Program, and Project Descriptions},
title = {Medical {{Subject Headings}} - {{Home Page}}},
publisher = {U.S. National Library of Medicine},
url = {https://www.nlm.nih.gov/mesh/meshhome.html},
urldate = {2023-04-09},
langid = {english},
file = {/home/will/Zotero/storage/RTW5EPBG/meshhome.html}
}
@online{officepublicaffairsjusticedepartment_2020, @online{officepublicaffairsjusticedepartment_2020,
title = {Office of {{Public Affairs}} | {{Justice Department Announces Global Resolution}} of {{Criminal}} and {{Civil Investigations}} with {{Opioid Manufacturer Purdue Pharma}} and {{Civil Settlement}} with {{Members}} of the {{Sackler Family}} | {{United States Department}} of {{Justice}}}, title = {Office of {{Public Affairs}} | {{Justice Department Announces Global Resolution}} of {{Criminal}} and {{Civil Investigations}} with {{Opioid Manufacturer Purdue Pharma}} and {{Civil Settlement}} with {{Members}} of the {{Sackler Family}} | {{United States Department}} of {{Justice}}},
date = {2020-10-21T10:05:07-04:00}, date = {2020-10-21T10:05:07-04:00},
@ -1045,6 +1030,15 @@
file = {/home/will/Zotero/storage/7ADA2YND/2022 ICD-10-PCS Official Guidelines for Coding and Reporting.pdf} file = {/home/will/Zotero/storage/7ADA2YND/2022 ICD-10-PCS Official Guidelines for Coding and Reporting.pdf}
} }
@misc{usfda_splfactsheet_2023,
title = {Indexing {{Spl Fact Sheet}}},
author = {{U.S. Food and Drug Administration}},
url = {https://www.fda.gov/media/85645/download},
urldate = {2023-04-08},
organization = {U.S. Food and Drug Administration},
file = {/home/will/Zotero/storage/KAHW2ABD/Indexing-SPL-Fact-Sheet.pdf}
}
@online{usnlm_fdaaa800finalrule, @online{usnlm_fdaaa800finalrule,
type = {Government}, type = {Government},
title = {{{FDAAA}} 801 and the {{Final Rule}} - {{ClinicalTrials}}.Gov}, title = {{{FDAAA}} 801 and the {{Final Rule}} - {{ClinicalTrials}}.Gov},
@ -1056,7 +1050,18 @@
file = {/home/will/Zotero/storage/V9YVGVK2/fdaaa.html} file = {/home/will/Zotero/storage/V9YVGVK2/fdaaa.html}
} }
@online{usnlm_rxnavinabos_2023, @online{usnlm_meshhomepage_2023,
type = {Product, Program, and Project Descriptions},
title = {Medical {{Subject Headings}} - {{Home Page}}},
author = {{U.S. National Library of Medicine}},
publisher = {U.S. National Library of Medicine},
url = {https://www.nlm.nih.gov/mesh/meshhome.html},
urldate = {2023-04-09},
langid = {english},
file = {/home/will/Zotero/storage/RTW5EPBG/meshhome.html}
}
@online{usnlm_rxnavinabox_2023,
title = {{{RxNav-in-a-Box}} - {{RxNav Applications}}}, title = {{{RxNav-in-a-Box}} - {{RxNav Applications}}},
author = {{U.S. National Library of Medicine}}, author = {{U.S. National Library of Medicine}},
url = {https://lhncbc.nlm.nih.gov/RxNav/applications/RxNav-in-a-Box.html}, url = {https://lhncbc.nlm.nih.gov/RxNav/applications/RxNav-in-a-Box.html},

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