Will King
|
87074aa42b
|
Worked on error preventing restore
Turns out that the code for checking if the database was up was wrong. I think I fixed it but am not sure.
|
1 year ago |
Will King
|
79902f400a
|
added some work on extracting data with LLMs
|
2 years ago |
|
Will King
|
b4a3cec7e6
|
Updated modefile
|
2 years ago |
|
Will King
|
211151e223
|
added modelfile for llama3.1-extractor:2024-08-28.1
|
2 years ago |
|
Will King
|
d90539a679
|
updated data-restoration script. Currently working
|
2 years ago |
|
Will King
|
142670d08a
|
added some data that had been left untracked
|
2 years ago |
youainti
|
6a931b3a49
|
added USP MMG data
|
3 years ago |
|
youainti
|
1c3d749ef4
|
added VA and USP DC datasets
|
3 years ago |
|
youainti
|
ef68adae89
|
Added backup of the aact_db
|
3 years ago |
|
youainti
|
a336fb92d9
|
Linking again after changing remotes
Merge branch 'main' of https://git.youainti.com/youainti/ClinicalTrialsDataProcessing into main
|
3 years ago |
|
will king
|
05a96a3a29
|
adding scripts
|
3 years ago |
|
will king
|
256177e569
|
Updated to what I am using so far
|
3 years ago |
|
youainti
|
b7290c271b
|
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
|
3 years ago |
|
will king
|
c4b8484cab
|
added submission date to extractor
|
3 years ago |
|
youainti
|
2a9b8349ba
|
storing local details
|
3 years ago |
|
will king
|
9a718f72a0
|
Adding sql queries that I need for the analysis
|
3 years ago |
|
will king
|
e88f450b8c
|
minor updates
|
3 years ago |
|
will king
|
4643351305
|
minor adjustments to improve workflow
|
3 years ago |
|
will king
|
c1f9f6e528
|
Updated to be able to run as webpage.
|
3 years ago |
|
will king
|
277b5b9bd5
|
Working validation tool
|
3 years ago |
|
will king
|
1de1ff9e4a
|
Minor updates to umls_... to add progress bars. Got the main features of validation running.
|
3 years ago |
|
will king
|
47996ba607
|
updated import-icd10... to use execute_values to speed up insert.
|
3 years ago |
|
will king
|
9ac4cffe61
|
Nearly finished interface to manually review icd-10 codes.
|
3 years ago |
|
will king
|
5600ad932d
|
Got the basics for matching and importing icd->GBD data
|
3 years ago |
|
youainti
|
d1edac3c4f
|
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
|
3 years ago |
|
youainti
|
e2edf1eb6b
|
created base of umls linking script
|
3 years ago |
|
will king
|
c5f3bfcdec
|
Merging work from other computer into home.
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing
|
3 years ago |
|
will king
|
12c3c69304
|
added Glbal burden fo disease data
|
3 years ago |
|
youainti
|
29644a0ad5
|
Connected Global Burdens of Disease Data to ICD-10 Codes
|
3 years ago |
|
youainti
|
123fe3b5e4
|
Merge completed: Merged working versions from home and office PCs
|
3 years ago |
|
youainti
|
470dfc2611
|
got a working merge of the who icd10 and cms icd10cm code spaces. This merge has a single entry for each code, prefering the WHO version when available.
|
3 years ago |
|
youainti
|
6876779c17
|
Merged two commits because I initially forgot to include the deleted
paths.
fixed some paths, added the CMS version of icd10cm, and added the downloaded source for the CMS data
forgot to remove old paths
|
3 years ago |
|
youainti
|
bbdd7552a8
|
adding various changed for which I don't remember the details. I'm adding it to avoid loosing it.
|
3 years ago |
|
youainti
|
4831864805
|
adjusted paths and started writing something to link GBD and ICD10
|
3 years ago |
|
youainti
|
6b5a48c77a
|
added GlobalBurden of Disease connections to ICD-10
|
3 years ago |
|
youainti
|
2aba3469d3
|
adding WHO ICD-10 Data
|
3 years ago |
|
will king
|
ef7ed7001b
|
added info for setting up the db from DrugCentral.org
|
3 years ago |
Will King
|
2ec314180f
|
Merge remote-tracking branch 'refs/remotes/origin/main'
|
3 years ago |
|
Will King
|
f6b56da261
|
Got working connection between trials and NDA/ANDA start times
|
3 years ago |
|
Will King
|
ed49d8728a
|
Update 'README.md'
|
3 years ago |
|
youainti
|
39397cc224
|
reorganized python scripts into package, added requisit sql, and added shell scripts to notify me when the systems are up again.
|
3 years ago |
|
youainti
|
804a90c247
|
lots of updates while integrating rxnav and aact into one dockerfile
|
3 years ago |
|
youainti
|
8dbf4e8c2e
|
removed unused files, began adjusting docker-composes so that they will work together.
|
3 years ago |
|
youainti
|
1a106a553e
|
moved containers to single location, ignored raw data
|
3 years ago |
|
youainti
|
f6f687fff5
|
removed old code (orangebook and old rxnorm_mappings) and adjusted the AACT_downloader to use a local directory when launching
|
3 years ago |
|
youainti
|
016a449258
|
merged the two settings
|
3 years ago |
|
youainti
|
091fd63366
|
committing results
|
3 years ago |
|
will king
|
bbf8c77e6d
|
more work on linking market data
|
3 years ago |
|
youainti
|
4283719d3d
|
added stashed changes
|
3 years ago |
|
youainti
|
52f8152afd
|
merging results
|
3 years ago |