will king
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47996ba607
|
updated import-icd10... to use execute_values to speed up insert.
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3 years ago |
|
will king
|
9ac4cffe61
|
Nearly finished interface to manually review icd-10 codes.
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3 years ago |
|
will king
|
5600ad932d
|
Got the basics for matching and importing icd->GBD data
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3 years ago |
|
youainti
|
d1edac3c4f
|
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
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3 years ago |
|
youainti
|
e2edf1eb6b
|
created base of umls linking script
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3 years ago |
|
will king
|
c5f3bfcdec
|
Merging work from other computer into home.
Merge branch 'main' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing
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3 years ago |
|
will king
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12c3c69304
|
added Glbal burden fo disease data
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3 years ago |
|
youainti
|
29644a0ad5
|
Connected Global Burdens of Disease Data to ICD-10 Codes
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3 years ago |
|
youainti
|
123fe3b5e4
|
Merge completed: Merged working versions from home and office PCs
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3 years ago |
|
youainti
|
470dfc2611
|
got a working merge of the who icd10 and cms icd10cm code spaces. This merge has a single entry for each code, prefering the WHO version when available.
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3 years ago |
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youainti
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6876779c17
|
Merged two commits because I initially forgot to include the deleted
paths.
fixed some paths, added the CMS version of icd10cm, and added the downloaded source for the CMS data
forgot to remove old paths
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3 years ago |
|
youainti
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bbdd7552a8
|
adding various changed for which I don't remember the details. I'm adding it to avoid loosing it.
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3 years ago |
|
youainti
|
4831864805
|
adjusted paths and started writing something to link GBD and ICD10
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3 years ago |
|
youainti
|
6b5a48c77a
|
added GlobalBurden of Disease connections to ICD-10
|
3 years ago |
|
youainti
|
2aba3469d3
|
adding WHO ICD-10 Data
|
3 years ago |
|
will king
|
ef7ed7001b
|
added info for setting up the db from DrugCentral.org
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3 years ago |
Will King
|
2ec314180f
|
Merge remote-tracking branch 'refs/remotes/origin/main'
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3 years ago |
|
Will King
|
f6b56da261
|
Got working connection between trials and NDA/ANDA start times
|
3 years ago |
|
Will King
|
ed49d8728a
|
Update 'README.md'
|
3 years ago |
|
youainti
|
39397cc224
|
reorganized python scripts into package, added requisit sql, and added shell scripts to notify me when the systems are up again.
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3 years ago |
|
youainti
|
804a90c247
|
lots of updates while integrating rxnav and aact into one dockerfile
|
3 years ago |
|
youainti
|
8dbf4e8c2e
|
removed unused files, began adjusting docker-composes so that they will work together.
|
3 years ago |
|
youainti
|
1a106a553e
|
moved containers to single location, ignored raw data
|
3 years ago |
|
youainti
|
f6f687fff5
|
removed old code (orangebook and old rxnorm_mappings) and adjusted the AACT_downloader to use a local directory when launching
|
3 years ago |
|
youainti
|
016a449258
|
merged the two settings
|
3 years ago |
|
youainti
|
091fd63366
|
committing results
|
3 years ago |
|
will king
|
bbf8c77e6d
|
more work on linking market data
|
3 years ago |
|
youainti
|
4283719d3d
|
added stashed changes
|
3 years ago |
|
youainti
|
52f8152afd
|
merging results
|
3 years ago |
|
youainti
|
23826fb576
|
recording local changes
|
3 years ago |
|
will king
|
966171c840
|
checking in incremental work. Figured out how to get dates.
|
3 years ago |
|
will king
|
f5788051f7
|
removed (reasonably successful) attempt at using API. I favor migrading db tables
|
3 years ago |
|
will king
|
97af862419
|
added RxNavInABox mariadb -> postgres importation and some of the views etc I am developing.
|
3 years ago |
|
youainti
|
4cc4c5c99f
|
Got some basic api testing done.
|
3 years ago |
|
youainti
|
fa37dccfff
|
setup downloader and tool to load nsde data to database
|
3 years ago |
|
youainti
|
339a83117e
|
updated justfile and added a sample .env file
|
3 years ago |
|
youainti
|
266c1c9686
|
Created downloader, table, and loader for market data
|
3 years ago |
|
youainti
|
dfbd82de54
|
Added instructions to README, improved downloader and adjusted justfile recipe to accomodate downloader
|
3 years ago |
|
youainti
|
fc38a2e92c
|
Fixed bug related to statuses sometimes containing notes
|
3 years ago |
|
youainti
|
3eb9a4130a
|
Got parsing updated to new format
|
3 years ago |
|
youainti
|
ee3e37e834
|
Added history schema, got extraction_lib to read and write from db
|
3 years ago |
|
youainti
|
4ae3064bf2
|
Got the historical downloader working (fixed an sql issue) and setup tools to select trials.
|
3 years ago |
|
youainti
|
61dc377e0a
|
reworked docker compose
|
3 years ago |
|
youainti
|
321e756cc6
|
Merge branch 'parser' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
|
3 years ago |
|
youainti
|
5d2140accd
|
simplified and renamed justfile recipes
|
3 years ago |
|
youainti
|
9b26cd99df
|
Simplified the DB creation process by running a postgres container directly
|
3 years ago |
|
youainti
|
1bdcc2fd83
|
added documentation
|
3 years ago |
|
youainti
|
4a2b1ea2ed
|
justfile will download, create, and populate db with AACT data
|
3 years ago |
|
youainti
|
91eeea100e
|
got downloads working
|
3 years ago |
|
youainti
|
e240fff07c
|
Added a justfile, adjusted docker networks, restructured how data is downloaded
|
3 years ago |