youainti
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39397cc224
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reorganized python scripts into package, added requisit sql, and added shell scripts to notify me when the systems are up again.
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3 years ago |
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youainti
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804a90c247
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lots of updates while integrating rxnav and aact into one dockerfile
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3 years ago |
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youainti
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8dbf4e8c2e
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removed unused files, began adjusting docker-composes so that they will work together.
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3 years ago |
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youainti
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1a106a553e
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moved containers to single location, ignored raw data
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3 years ago |
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youainti
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f6f687fff5
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removed old code (orangebook and old rxnorm_mappings) and adjusted the AACT_downloader to use a local directory when launching
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3 years ago |
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youainti
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016a449258
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merged the two settings
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3 years ago |
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youainti
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091fd63366
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committing results
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3 years ago |
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will king
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bbf8c77e6d
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more work on linking market data
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3 years ago |
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youainti
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4283719d3d
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added stashed changes
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3 years ago |
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youainti
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52f8152afd
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merging results
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3 years ago |
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youainti
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23826fb576
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recording local changes
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3 years ago |
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will king
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966171c840
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checking in incremental work. Figured out how to get dates.
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3 years ago |
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will king
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f5788051f7
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removed (reasonably successful) attempt at using API. I favor migrading db tables
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3 years ago |
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will king
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97af862419
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added RxNavInABox mariadb -> postgres importation and some of the views etc I am developing.
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3 years ago |
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youainti
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4cc4c5c99f
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Got some basic api testing done.
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3 years ago |
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youainti
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fa37dccfff
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setup downloader and tool to load nsde data to database
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3 years ago |
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youainti
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339a83117e
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updated justfile and added a sample .env file
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3 years ago |
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youainti
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266c1c9686
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Created downloader, table, and loader for market data
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3 years ago |
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youainti
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dfbd82de54
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Added instructions to README, improved downloader and adjusted justfile recipe to accomodate downloader
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3 years ago |
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youainti
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fc38a2e92c
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Fixed bug related to statuses sometimes containing notes
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3 years ago |
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youainti
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3eb9a4130a
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Got parsing updated to new format
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3 years ago |
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youainti
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ee3e37e834
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Added history schema, got extraction_lib to read and write from db
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3 years ago |
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youainti
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4ae3064bf2
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Got the historical downloader working (fixed an sql issue) and setup tools to select trials.
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3 years ago |
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youainti
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61dc377e0a
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reworked docker compose
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3 years ago |
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youainti
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321e756cc6
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Merge branch 'parser' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
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3 years ago |
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youainti
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5d2140accd
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simplified and renamed justfile recipes
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3 years ago |
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youainti
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9b26cd99df
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Simplified the DB creation process by running a postgres container directly
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3 years ago |
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youainti
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1bdcc2fd83
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added documentation
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3 years ago |
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youainti
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4a2b1ea2ed
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justfile will download, create, and populate db with AACT data
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3 years ago |
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youainti
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91eeea100e
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got downloads working
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3 years ago |
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youainti
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e240fff07c
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Added a justfile, adjusted docker networks, restructured how data is downloaded
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3 years ago |
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youainti
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a2c0e4dcc7
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added graph of data linkages
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4 years ago |
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youainti
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e4971ae2f6
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checking everything in
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4 years ago |
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youainti
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f3d73a5ac1
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Added instructions on extracting other data
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4 years ago |
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youainti
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9d5a726494
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added feature to extract start_date. deleted unused files and modified others for ease of use.
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4 years ago |
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youainti
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453e82974e
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extraction-lib as a functional module and the associated history file.
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4 years ago |
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will king
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a9027c9467
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added another test file
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4 years ago |
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will king
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b1c146d550
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Mostly working data extraction, removed dependency on text processing (will remove in future commit)
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4 years ago |
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will king
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71e87a9abe
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Saving current status.
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4 years ago |
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will king
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d8d00101fa
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Started building data extraction tools
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4 years ago |
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youainti
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9850f4c677
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setting up the extraction tools and including test cases.
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4 years ago |
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youainti
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ff2c5b9ddd
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Added rate limiting functionality. Not tested as things ran just fine for the 1700 trials I downloaded.
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4 years ago |
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youainti
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e849ee50be
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added a test for downloading issues
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4 years ago |
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will king
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4bf9b4fab9
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Testing if db_connection will work over tailscale. It does.
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4 years ago |
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will king
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40a34ae1c3
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Merging something I accidentally committed into main instead of history-download
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4 years ago |
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will king
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bf28ad30b2
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Fixed version extraction
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4 years ago |
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youainti
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d3f20ca817
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Fixed trial reservation issues by adjusting when the reservation querey is written to the db
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4 years ago |
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youainti
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5bd3d4ee95
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updated table definitions for views so that they deliver the correct information
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4 years ago |
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youainti
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2aa8fdee4e
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reservations working properly. Still missing rate control
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4 years ago |
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youainti
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820f082e0d
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added documentation comments to classes and functions
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4 years ago |