youainti
|
1a106a553e
|
moved containers to single location, ignored raw data
|
3 years ago |
|
youainti
|
f6f687fff5
|
removed old code (orangebook and old rxnorm_mappings) and adjusted the AACT_downloader to use a local directory when launching
|
3 years ago |
|
youainti
|
016a449258
|
merged the two settings
|
3 years ago |
|
youainti
|
091fd63366
|
committing results
|
3 years ago |
|
will king
|
bbf8c77e6d
|
more work on linking market data
|
3 years ago |
|
youainti
|
4283719d3d
|
added stashed changes
|
3 years ago |
|
youainti
|
52f8152afd
|
merging results
|
3 years ago |
|
youainti
|
23826fb576
|
recording local changes
|
3 years ago |
|
will king
|
966171c840
|
checking in incremental work. Figured out how to get dates.
|
3 years ago |
|
will king
|
f5788051f7
|
removed (reasonably successful) attempt at using API. I favor migrading db tables
|
3 years ago |
|
will king
|
97af862419
|
added RxNavInABox mariadb -> postgres importation and some of the views etc I am developing.
|
3 years ago |
|
youainti
|
4cc4c5c99f
|
Got some basic api testing done.
|
3 years ago |
|
youainti
|
fa37dccfff
|
setup downloader and tool to load nsde data to database
|
3 years ago |
|
youainti
|
339a83117e
|
updated justfile and added a sample .env file
|
3 years ago |
|
youainti
|
266c1c9686
|
Created downloader, table, and loader for market data
|
3 years ago |
|
youainti
|
dfbd82de54
|
Added instructions to README, improved downloader and adjusted justfile recipe to accomodate downloader
|
3 years ago |
|
youainti
|
fc38a2e92c
|
Fixed bug related to statuses sometimes containing notes
|
3 years ago |
|
youainti
|
3eb9a4130a
|
Got parsing updated to new format
|
3 years ago |
|
youainti
|
ee3e37e834
|
Added history schema, got extraction_lib to read and write from db
|
3 years ago |
|
youainti
|
4ae3064bf2
|
Got the historical downloader working (fixed an sql issue) and setup tools to select trials.
|
3 years ago |
|
youainti
|
61dc377e0a
|
reworked docker compose
|
3 years ago |
|
youainti
|
321e756cc6
|
Merge branch 'parser' of ssh://gitea.kgjk.icu:3022/Research/ClinicalTrialsDataProcessing into main
|
3 years ago |
|
youainti
|
5d2140accd
|
simplified and renamed justfile recipes
|
3 years ago |
|
youainti
|
9b26cd99df
|
Simplified the DB creation process by running a postgres container directly
|
3 years ago |
|
youainti
|
1bdcc2fd83
|
added documentation
|
3 years ago |
|
youainti
|
4a2b1ea2ed
|
justfile will download, create, and populate db with AACT data
|
3 years ago |
|
youainti
|
91eeea100e
|
got downloads working
|
3 years ago |
|
youainti
|
e240fff07c
|
Added a justfile, adjusted docker networks, restructured how data is downloaded
|
3 years ago |
|
youainti
|
a2c0e4dcc7
|
added graph of data linkages
|
4 years ago |
|
youainti
|
e4971ae2f6
|
checking everything in
|
4 years ago |
|
youainti
|
f3d73a5ac1
|
Added instructions on extracting other data
|
4 years ago |
|
youainti
|
9d5a726494
|
added feature to extract start_date. deleted unused files and modified others for ease of use.
|
4 years ago |
|
youainti
|
453e82974e
|
extraction-lib as a functional module and the associated history file.
|
4 years ago |
|
will king
|
a9027c9467
|
added another test file
|
4 years ago |
|
will king
|
b1c146d550
|
Mostly working data extraction, removed dependency on text processing (will remove in future commit)
|
4 years ago |
|
will king
|
71e87a9abe
|
Saving current status.
|
4 years ago |
|
will king
|
d8d00101fa
|
Started building data extraction tools
|
4 years ago |
|
youainti
|
9850f4c677
|
setting up the extraction tools and including test cases.
|
4 years ago |
|
youainti
|
ff2c5b9ddd
|
Added rate limiting functionality. Not tested as things ran just fine for the 1700 trials I downloaded.
|
4 years ago |
|
youainti
|
e849ee50be
|
added a test for downloading issues
|
4 years ago |
|
will king
|
4bf9b4fab9
|
Testing if db_connection will work over tailscale. It does.
|
4 years ago |
|
will king
|
40a34ae1c3
|
Merging something I accidentally committed into main instead of history-download
|
4 years ago |
|
will king
|
bf28ad30b2
|
Fixed version extraction
|
4 years ago |
|
youainti
|
d3f20ca817
|
Fixed trial reservation issues by adjusting when the reservation querey is written to the db
|
4 years ago |
|
youainti
|
5bd3d4ee95
|
updated table definitions for views so that they deliver the correct information
|
4 years ago |
|
youainti
|
2aa8fdee4e
|
reservations working properly. Still missing rate control
|
4 years ago |
|
youainti
|
820f082e0d
|
added documentation comments to classes and functions
|
4 years ago |
|
youainti
|
9623bc0550
|
Housekeeping: Renamed folder to distinguish between aact and history downloader. Updated .gitignore to handle orangebook data
|
4 years ago |
|
youainti
|
84b38166e1
|
updates to AACT downloader schemas to match what I am actually using.
|
4 years ago |
|
youainti
|
5a1f744449
|
Adding attempts at orangbook processing. The CID parser stuff is in case I need to parse the pdfs
|
4 years ago |