Linking again after changing remotes

Merge branch 'main' of https://git.youainti.com/youainti/ClinicalTrialsDataProcessing into main

.dbeaver/.data-sources.json.bak

@@ -21,13 +21,17 @@
 			"name": "aact_db",
 			"save-password": true,
 			"configuration": {
-				"host": "will-office",
+				"host": "100.95.169.11",
 				"port": "5432",
 				"database": "aact_db",
-				"url": "jdbc:postgresql://will-office:5432/aact_db",
+				"url": "jdbc:postgresql://100.95.169.11:5432/aact_db",
 				"configurationType": "MANUAL",
 				"type": "dev",
+				"provider-properties": {},
 				"auth-model": "native"
+			},
+			"custom-properties": {
+				"resultset.maxrows": "500"
 			}
 		},
 		"postgres-jdbc-186cd8f479f-6cc3c10c8adc3359": {
@@ -42,7 +46,6 @@
 				"url": "jdbc:postgresql://localhost:54320/postgres",
 				"configurationType": "MANUAL",
 				"type": "dev",
-				"provider-properties": {},
 				"auth-model": "native"
 			}
 		}

.dbeaver/.project-metadata.json.bak

@@ -1 +1 @@
-{"resources":{"Scripts/DiseaseBurdens_create_table.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"},"Scripts/GlobalBurdensOfDisease2019Codebook.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"DiseaseBurden"},"development_sql/ASSOICATING NCTIDs to NDCs and Marketing dates.sql":{"default-schema":"public","default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db"}}}
+{"resources":{"Scripts/ASSOICATING NCTIDs to NDCs and Marketing dates.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"},"Scripts/Data_summaries.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"},"Scripts/DevelopingLinks.sql":{"default-schema":"public","default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db"},"Scripts/DiseaseBurdens_create_table.sql":{"default-schema":"public","default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db"},"Scripts/GlobalBurdensOfDisease2019Codebook.sql":{"default-schema":"DiseaseBurden","default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db"},"Scripts/GroupingTrials.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"},"Scripts/Script.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"},"Scripts/TablesAndViews_Public.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"},"development_sql/ASSOICATING NCTIDs to NDCs and Marketing dates.sql":{"default-schema":"public","default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db"}}}

Scripts/ASSOICATING NCTIDs to NDCs and Marketing dates.sql

@@ -16,8 +16,8 @@ SELECT
     bi.nct_id ,
     bi.downcase_mesh_term, 
     rr.tty2 ,
-    rr.rxcui2 as bn_or_in_cui --brand or ingredient
+    rr.rxcui2 as bn_or_in_cui, --brand or ingredient
-    ,count(*)
+    count(*)
 FROM ctgov.browse_interventions bi
     left outer JOIN rxnorm_migrated.rxnorm_props AS rp
         on bi.downcase_mesh_term  = rp.propvalue1 --link names to drug cuis ()
@@ -123,4 +123,11 @@ group by mttn.nct_id,n.application_number_or_citation
 order by mttn.nct_id 
 ;
 
+---Number of trials after a certain date
+select nct_id,count(distinct application_number_or_citation) 
+from public.match_trial_to_marketing_start_date mttmsd
+where "min" > '2012-06-01'
+group by nct_id
+;
+
 

Scripts/Data_summaries.sql

@@ -17,11 +17,12 @@ group by status;
 
 /* Get a list of trials
  * -- There are currently 304 trials for which I was able to extract unique snapshots (2023-03-29)
+ * -- There are currently 1138 trials for which I was able to extract unique snapshots (2023-04-03)
  * */
 select count(distinct nct_id) from history.trial_snapshots ts
 
 /* Get the number of listed conditions
- * -- There are only 609 listed (MeSH classified) conditions from 284 trials
+ * -- There are only 609 listed (MeSH classified) conditions from 284 trials(2023-03-29)
  * I may need to expand how I address conditions
  */
 select count(*)
@@ -60,5 +61,40 @@ nct_id in (select distinct nct_id from history.trial_snapshots ts)
  */
 select count(*) from "DiseaseBurden".trial_to_icd10 tti ;
 --1383 before run at 8pm 2023-03-29
+--5209 at 2023-04-03T11:21
 
 
+/*Get the number of trials that have links to icd10 trials*/
+select tti.approved,count(distinct nct_id) from "DiseaseBurden".trial_to_icd10 tti 
+group by tti.approved;
+
+-- finding and removing duplicates from the trial linking stuff. Useful when you redownload trials.
+/*
+with CTE as (
+    select row_number() over (partition by nct_id, "condition",ui) as rownum, *
+    from "DiseaseBurden".trial_to_icd10 tti 
+)
+delete from "DiseaseBurden".trial_to_icd10 tti2 
+where id in (
+    select id from cte where rownum > 1
+    );
+*/
+
+--get the number of completed vs terminated trials
+select overall_status,count(distinct nct_id) 
+from ctgov.studies s 
+where nct_id in (select distinct nct_id from "DiseaseBurden".trial_to_icd10 tti where tti.approved ='accepted' )
+group by overall_status 
+;
+
+select overall_status,count(distinct nct_id) 
+from ctgov.studies s 
+where nct_id in (select distinct nct_id from "DiseaseBurden".trial_to_icd10 tti)
+group by overall_status 
+;
+
+select overall_status,count(distinct nct_id) 
+from ctgov.studies s 
+where nct_id in (select distinct nct_id from history.trial_snapshots ts  )
+group by overall_status 
+;

Scripts/DevelopingLinks.sql

@@ -1,3 +1,5 @@
+--TODO: Document and migrate to setup
+
 drop table if exists "DiseaseBurden".trial_to_icd10;
 drop type if exists "DiseaseBurden".validation_type;
 

Scripts/ExtractingData.sql

@@ -0,0 +1,658 @@
+create extension tablefunc;
+
+/*Getting Trial Data all together
+ * There are 3 main datasets to join per trial:
+ * 
+ * - Trial Data (still need to stick it together)
+ *   - Duration and enrollment data
+ * - Compound Marketing (can get for any trial)
+ *   - how many individual brands per compound at the start of the trial
+ * - Disease Data (can get for verified trials)
+ *   - Population upper limit (Global Burdens of Disease)
+ *   - Category (ICD10 2nd level groups)
+ */
+
+/*Disease Data*/
+-- ICD10 Category and GBD data
+with cte as (
+    select 
+        nct_id,
+        max("level") as max_level
+    from trial_to_cause
+    group by nct_id
+), cte2 as (
+    select 
+        ttc.nct_id,
+        ttc.ui,
+        ttc."condition",
+        ttc.cause_text,
+        ttc.cause_id,
+        cte.max_level
+    from trial_to_cause ttc
+        join cte 
+            on cte.nct_id=ttc.nct_id
+    where ttc."level"=cte.max_level
+    group by 
+        ttc.nct_id,
+        ttc.ui,
+        ttc."condition",
+        ttc.cause_text,
+        ttc.cause_id,
+        cte.max_level
+    order by nct_id,ui
+), cte3 as (
+select 
+    nct_id,
+    substring(cte2.ui for 3) as code,
+    cte2."condition",
+    cte2.cause_text,
+    cte2.cause_id,
+    ic.id as category_id,
+    ic.group_name 
+from cte2
+    join "DiseaseBurden".icd10_categories ic 
+        on 
+            substring(cte2.ui for 3) <= ic.end_code
+            and         
+            substring(cte2.ui for 3) >= ic.start_code
+)
+select nct_id, cause_id,category_id
+from cte3
+group by nct_id, cause_id, category_id
+;
+--still need to link to actual disease burdens.
+
+/*Compound Marketing Data*/
+---Number of trials after a certain date
+with marketing_cte as (
+    select nct_id,count(distinct application_number_or_citation) 
+    from public.match_trial_to_marketing_start_date mttmsd
+    where "min" > '2012-06-01'
+    group by nct_id
+)
+select * from marketing_cte
+;
+
+/*Get versions*/
+/* Ignore this version
+with cte1 as (
+    select nct_id,min("version") over (partition by nct_id) as min_version
+    from history.trial_snapshots ts 
+    where 
+        ts.start_date < ts.submission_date
+), cte2 as (
+    select * from cte1
+    group by nct_id, min_version
+    order by nct_id 
+), cte3 as (
+    select 
+        ts2.nct_id, 
+        ts2."version", 
+        ts2.overall_status,
+        ts2.submission_date,
+        ts2.start_date,
+        ts2.enrollment,
+        ts2.enrollment_category,
+        ts2.primary_completion_date,
+        ts2.primary_completion_date_category ,
+        --mv.nct_id,
+        mv.min_version
+    from history.trial_snapshots ts2 
+        join cte2 mv 
+            on mv.nct_id = ts2.nct_id
+    where 
+        ts2."version" = mv.min_version
+    order by ts2.nct_id 
+), cte4 as (
+    select cte3.nct_id, cte3.submission_date - cte3.start_date as submission_presecence
+    from cte3
+)
+select avg(submission_presecence)
+from cte4
+;
+--avg 61 day difference
+ */
+
+--use this version 
+with cte1 as ( --get trials
+    select nct_id,max("version") over (partition by nct_id) as min_version
+    from history.trial_snapshots ts 
+    where 
+        ts.start_date > ts.submission_date
+), cte2 as ( --
+    select * from cte1
+    group by nct_id, min_version
+    order by nct_id 
+), cte3 as (
+    select 
+        ts2.nct_id, 
+        ts2."version", 
+        ts2.overall_status,
+        ts2.submission_date,
+        ts2.start_date,
+        ts2.enrollment,
+        ts2.enrollment_category,
+        ts2.primary_completion_date,
+        ts2.primary_completion_date_category ,
+        --mv.nct_id,
+        mv.min_version
+    from history.trial_snapshots ts2 
+        join cte2 mv 
+            on mv.nct_id = ts2.nct_id
+    where 
+        ts2."version" = mv.min_version
+    order by ts2.nct_id 
+)
+select * 
+from cte3
+    where 
+        enrollment is null 
+        or enrollment_category is null 
+        or primary_completion_date is null 
+        or primary_completion_date_category is null 
+        or start_date is null
+/*, cte4 as (
+    select cte3.nct_id, cte3.submission_date - cte3.start_date as submission_presecence
+    from cte3
+)
+select avg(submission_presecence)
+from cte4
+; -- -33 day difference on average
+*/
+
+
+        
+        
+        
+        
+        
+        
+        
+with cte1_min as (
+    select nct_id,min("version") over (partition by nct_id) as min_version
+    from history.trial_snapshots ts 
+    where 
+        ts.start_date <= ts.submission_date
+),cte1_max as (
+    select nct_id,max("version") over (partition by nct_id) as max_version
+    from history.trial_snapshots ts 
+    where 
+        ts.start_date >= ts.submission_date
+), cte2_min as (
+    select * from cte1_min
+    group by nct_id, min_version
+), cte2_max as (
+    select * from cte1_max
+    group by nct_id, max_version
+)
+select *
+from cte2_min 
+    join cte2_max
+        on cte2_min.nct_id=cte2_max.nct_id
+where min_version >= max_version
+        
+        
+        
+        
+        
+        
+        
+        
+
+
+/* Neet to take a different tack in filling out the is version of the data.
+ * The idea is that we need the latest of each major category
+ * before the start date.
+ * */
+
+--get the set of trials which have 
+with cte as ( 
+    /* Get the absolute difference between the start date and the 
+     * submission_date for each version of the trial (measured in days)
+     * 
+     */
+    select 
+        s.nct_id,
+        s.start_date,
+        ts."version",
+        ts.submission_date,
+        abs(extract(epoch from ts.submission_date - s.start_date)::float/(24*60*60)) as start_deviance
+    from ctgov.studies s 
+        join history.trial_snapshots ts 
+            on s.nct_id = ts.nct_id 
+    where s.nct_id in (select distinct nct_id from "DiseaseBurden".trial_to_icd10 tti)
+),cte2 as (
+    /* Rank each version based on it's proximity to the start date
+     * */
+    select 
+        cte.nct_id,
+        cte."version", 
+        row_number() over (partition by cte.nct_id order by cte.start_deviance) as rownum,
+        cte.submission_date,
+        cte.start_deviance,
+        cte.start_date,
+        ts.primary_completion_date ,
+        ts.primary_completion_date_category ,
+        ts.overall_status ,
+        ts.enrollment ,
+        ts.enrollment_category 
+    from cte
+        join history.trial_snapshots ts 
+            on cte.nct_id=ts.nct_id and cte."version"=ts."version"
+), cte3_primary_completion as (
+    /* for each trial
+     * select the version with a filled out primary_completion_source
+     * that is closest to the start date.
+     * */
+    select cte2.nct_id, min(cte2.rownum) as primary_completion_source
+    from cte2
+    where cte2.primary_completion_date is not null
+    group by cte2.nct_id
+), cte3_enrollment as (
+    /* for each trial
+     * select the version with a filled out enrollment
+     * that is closest to the start date.
+     * */
+    select cte2.nct_id, min(cte2.rownum) as enrollment_source
+    from cte2
+    where cte2.enrollment is not null
+    group by cte2.nct_id
+), cte4 as (
+/* join the best options together to get the data of interest.
+ * 
+ * On further inspection there are just a view of those, with 
+ * many of them having a 7+ month difference between the two versions.
+ * I think I am going to drop them.
+ * */
+select 
+    c3e.nct_id,
+    --c2a.submission_date as submission_date_a,
+    --c2b.submission_date as submission_date_b,
+    --c3e.enrollment_source,
+    c2a."version" as version_a,
+    c2a.enrollment,
+    c2a.enrollment_category,
+    --c3p.primary_completion_source ,
+    c2b."version" as version_b,
+    c2b.primary_completion_date,
+    c2b.primary_completion_date_category
+from cte3_enrollment c3e
+    join cte2 c2a
+        on c3e.nct_id = c2a.nct_id and c3e.enrollment_source = c2a.rownum
+    join cte3_primary_completion c3p
+        on c3e.nct_id = c3p.nct_id
+    join cte2 c2b 
+        on c3p.nct_id=c2b.nct_id and c3p.primary_completion_source = c2b.rownum
+), cte5 as (
+    select nct_id
+    from cte4 where version_a != version_b
+)
+select 
+    c.nct_id,
+    s2.overall_status,
+    c.enrollment as planned_enrollment,
+    s2.enrollment, 
+    s2.start_date,
+    c.primary_completion_date as planned_primary_completion_date,
+    s2.primary_completion_date,
+    extract(epoch from c.primary_completion_date - s2.start_date)/(24*60*60) as planned_duration,
+    s2.primary_completion_date - s2.start_date as actual_duration
+from cte4 c
+    join ctgov.studies s2 
+        on c.nct_id = s2.nct_id 
+where c.nct_id not in (select nct_id from cte5)
+;
+
+
+/*
+ * Concern about causal inference
+ * 
+ * When putting the data together for CBO it looked like we got occasional updates about 
+ * the status of trials that included enrollment updates.
+ * That doesn't appear to be the case, but that messes with the ability to causally identify
+ * any results. I need to be careful about this data is used.
+ * 
+ * I created the statements below to get the data that I need.
+ */
+
+
+
+----get the set of trial snapshots
+create or replace view public.view_cte as 
+select 
+    nct_id, 
+    primary_completion_date, 
+    primary_completion_date_category, 
+    enrollment, 
+    start_date,
+    enrollment_category ,
+    overall_status,
+    --count("version"),
+    min(submission_date) as earliest_date_observed
+from history.trial_snapshots ts 
+where 
+    nct_id in (select distinct nct_id from "DiseaseBurden".trial_to_icd10 tti where tti.approved='accepted')
+    and submission_date >= start_date 
+    and overall_status not in ('Completed','Terminated')
+group by 
+    nct_id, 
+    primary_completion_date, 
+    primary_completion_date_category,
+    start_date,
+    enrollment, 
+    enrollment_category ,
+    overall_status
+;
+create or replace view public.view_disbur_cte0 as 
+select tti.nct_id, tti.ui , tti."condition",itc.cause_text, ch.cause_id, ch."level" 
+from "DiseaseBurden".trial_to_icd10 tti 
+    join "DiseaseBurden".icd10_to_cause itc
+        on replace(REPLACE(tti.ui,'-',''),'.','') = replace(REPLACE(itc.code ,'-',''),'.','')
+    join "DiseaseBurden".cause_hierarchy  ch
+        on itc.cause_text = ch.cause_name
+where 
+    tti.approved = 'accepted'
+;
+create or replace view  public.view_trial_to_cause as 
+select tti.nct_id, tti.ui , tti."condition",itc.cause_text, ch.cause_id, ch."level" 
+from "DiseaseBurden".trial_to_icd10 tti 
+    join "DiseaseBurden".icd10_to_cause itc
+        on replace(REPLACE(tti.ui,'-',''),'.','') = replace(REPLACE(itc.code ,'-',''),'.','')
+    join "DiseaseBurden".cause_hierarchy  ch
+        on itc.cause_text = ch.cause_name
+where 
+    tti.approved = 'accepted'
+order by nct_id 
+;--does this duplicate the view above?
+
+create or replace view  public.view_disbur_cte as 
+select 
+    nct_id,
+    max("level") as max_level
+from view_disbur_cte0
+group by nct_id
+
+;
+create or replace view  public.view_disbur_cte2 as 
+select 
+    ttc.nct_id,
+    ttc.ui,
+    ttc."condition",
+    ttc.cause_text,
+    ttc.cause_id,
+    disbur_cte.max_level
+from view_trial_to_cause ttc
+    join view_disbur_cte as disbur_cte
+        on disbur_cte.nct_id=ttc.nct_id
+where ttc."level"=disbur_cte.max_level
+group by 
+    ttc.nct_id,
+    ttc.ui,
+    ttc."condition",
+    ttc.cause_text,
+    ttc.cause_id,
+    disbur_cte.max_level
+order by nct_id,ui
+;
+create or replace view  public.view_disbur_cte3 as 
+select 
+    nct_id,
+    substring(disbur_cte2.ui for 3) as code,
+    disbur_cte2."condition",
+    disbur_cte2.cause_text,
+    disbur_cte2.cause_id,
+    ic.chapter_code  as category_id,
+    ic.group_name,
+    disbur_cte2.max_level
+from view_disbur_cte2 as disbur_cte2
+    join "DiseaseBurden".icd10_categories ic 
+        on 
+            substring(disbur_cte2.ui for 3) <= ic.end_code
+            and         
+            substring(disbur_cte2.ui for 3) >= ic.start_code
+where ic."level" = 1
+    
+;
+create or replace view  public.view_burdens_cte as 
+select * 
+from "DiseaseBurden".burdens b 
+where  b.sex_id = 3 --both sexes
+    and b.metric_id = 1 --number/count
+    and b.measure_id = 2 --DALYs
+    and b.age_id =22 --all ages
+;
+create or replace view  public.view_burdens_cte2 as 
+select 
+    --c1.location_id,
+    c1.cause_id,
+    c1."year",
+    --high sdi
+    c1.val as h_sdi_val,
+    c1.upper_95 as h_sdi_u95,
+    c1.lower_95 as h_sdi_l95,
+    --high-middle sdi
+    c2.val as hm_sdi_val,
+    c2.upper_95 as hm_sdi_u95,
+    c2.lower_95 as hm_sdi_l95,
+    --middle sdi
+    c3.val as m_sdi_val,
+    c3.upper_95 as m_sdi_u95,
+    c3.lower_95 as m_sdi_l95,
+    --low-middle sdi
+    c4.val as lm_sdi_val,
+    c4.upper_95 as lm_sdi_u95,
+    c4.lower_95 as lm_sdi_l95,
+    --low sdi
+    c5.val as l_sdi_val,
+    c5.upper_95 as l_sdi_u95,
+    c5.lower_95 as l_sdi_l95
+from view_burdens_cte c1
+    join view_burdens_cte c2
+        on c1.cause_id = c2.cause_id
+            and c1."year" = c2."year"
+    join view_burdens_cte c3
+        on c1.cause_id = c3.cause_id
+            and c1."year" = c3."year"
+    join view_burdens_cte c4
+        on c1.cause_id = c4.cause_id
+            and c1."year" = c4."year"
+    join view_burdens_cte c5
+        on c1.cause_id = c5.cause_id
+            and c1."year" = c5."year"
+where c1.location_id = 44635
+    and c2.location_id = 44634
+    and c3.location_id = 44639
+    and c4.location_id = 44636
+    and c5.location_id = 44637
+;
+--drop view if exists public.formatted_data cascade;
+create or replace view public.formatted_data as 
+select 
+    cte.nct_id,
+    cte.start_date,
+    cte.enrollment as current_enrollment,
+    cte.enrollment_category,
+    cte.overall_status  as current_status,
+    cte.earliest_date_observed,
+    extract( epoch from (cte.earliest_date_observed - cte.start_date))/extract( epoch from (cte.primary_completion_date - cte.start_date)) as elapsed_duration
+    ,count(distinct mttmsd."application_number_or_citation") as n_brands
+    ,dbc3.code
+    ,dbc3."condition"
+    ,dbc3.cause_text
+    ,dbc3.cause_id
+    ,dbc3.category_id
+    ,dbc3.group_name
+    ,dbc3.max_level
+    --c1.location_id,
+    --,b.cause_id
+    ,b."year",
+    --high sdi
+    b.h_sdi_val,
+    b.h_sdi_u95,
+    b.h_sdi_l95,
+    --high-middle sdi
+    b.hm_sdi_val,
+    b.hm_sdi_u95,
+    b.hm_sdi_l95,
+    --middle sdi
+    b.m_sdi_val,
+    b.m_sdi_u95,
+    b.m_sdi_l95,
+    --low-middle sdi
+    b.lm_sdi_val,
+    b.lm_sdi_u95,
+    b.lm_sdi_l95,
+    --low sdi
+    b.l_sdi_val,
+    b.l_sdi_u95,
+    b.l_sdi_l95
+from view_cte as cte
+    join public.match_trial_to_marketing_start_date mttmsd 
+        on cte.nct_id = mttmsd."nct_id"
+    join view_disbur_cte3 dbc3
+        on dbc3.nct_id = cte.nct_id
+    join view_burdens_cte2 b 
+        on b.cause_id = dbc3.cause_id and extract(year from b."year") = extract(year from cte.earliest_date_observed)
+where 
+    mttmsd."min" <= cte.earliest_date_observed
+group by 
+    cte.nct_id,
+    cte.start_date,
+    cte.enrollment,
+    cte.enrollment_category,
+    cte.overall_status,
+    cte.earliest_date_observed,
+    elapsed_duration
+    ,dbc3.code
+    ,dbc3."condition"
+    ,dbc3.cause_text
+    ,dbc3.cause_id
+    ,dbc3.category_id
+    ,dbc3.group_name
+    ,dbc3.max_level
+    --c1.location_id,
+    ,b.cause_id,
+    b."year",
+    --high sdi
+    b.h_sdi_val,
+    b.h_sdi_u95,
+    b.h_sdi_l95,
+    --high-middle sdi
+    b.hm_sdi_val,
+    b.hm_sdi_u95,
+    b.hm_sdi_l95,
+    --middle sdi
+    b.m_sdi_val,
+    b.m_sdi_u95,
+    b.m_sdi_l95,
+    --low-middle sdi
+    b.lm_sdi_val,
+    b.lm_sdi_u95,
+    b.lm_sdi_l95,
+    --low sdi
+    b.l_sdi_val,
+    b.l_sdi_u95,
+    b.l_sdi_l95
+order by cte.nct_id ,cte.earliest_date_observed
+;--used this one 2023-04-05
+--get the planned enrollment
+create or replace view public.time_between_submission_and_start_view as 
+    /* Get the absolute difference between the start date and the 
+     * submission_date for each version of the trial (measured in days)
+     * 
+     */
+select 
+    s.nct_id,
+    s.start_date,
+    ts."version",
+    ts.submission_date,
+    abs(extract(epoch from ts.submission_date - s.start_date)::float/(24*60*60)) as start_deviance
+from ctgov.studies s 
+    join history.trial_snapshots ts 
+        on s.nct_id = ts.nct_id 
+where s.nct_id in (select distinct nct_id from "DiseaseBurden".trial_to_icd10 tti)
+;
+create or replace view rank_proximity_to_start_time_view as 
+    /* Rank each version based on it's proximity to the start date
+     * */
+    select 
+        cte.nct_id,
+        cte."version", 
+        row_number() over (partition by cte.nct_id order by cte.start_deviance) as rownum,
+        cte.submission_date,
+        cte.start_deviance,
+        cte.start_date,
+        ts.primary_completion_date ,
+        ts.primary_completion_date_category ,
+        ts.overall_status ,
+        ts.enrollment ,
+        ts.enrollment_category 
+    from public.time_between_submission_and_start_view cte
+        join history.trial_snapshots ts 
+            on cte.nct_id=ts.nct_id and cte."version"=ts."version"
+;
+create or replace view enrollment_closest_to_start_view as 
+    /* for each trial
+     * select the version with a filled out enrollment
+     * that is closest to the start date.
+     * */
+    select cte2.nct_id, min(cte2.rownum) as enrollment_source
+    from rank_proximity_to_start_time_view cte2
+    where cte2.enrollment is not null
+    group by cte2.nct_id
+;
+--drop view public.formatted_data_with_planned_enrollment ;
+create or replace view formatted_data_with_planned_enrollment as
+select 
+    f.*, 
+    s.overall_status as final_status,
+    c2a."version",
+    c2a.enrollment as planned_enrollment
+from formatted_data f
+    join ctgov.studies s 
+        on f.nct_id = s.nct_id 
+    join enrollment_closest_to_start_view c3e
+        on c3e.nct_id = f.nct_id
+    join rank_proximity_to_start_time_view c2a
+        on c3e.nct_id = c2a.nct_id and c3e.enrollment_source = c2a.rownum
+;
+select * from formatted_data_with_planned_enrollment
+
+-------------------GET COUNTS------------------
+select count(distinct nct_id) from public.view_cte; --88
+select count(distinct nct_id) from public.view_disbur_cte0; --130
+select count(distinct nct_id) from public.view_trial_to_cause; --130
+select count(distinct nct_id) from public.view_disbur_cte;--130
+select count(distinct nct_id) from public.view_disbur_cte2;--130
+select count(distinct nct_id) from public.view_disbur_cte3;--130
+select count(distinct nct_id) from public.formatted_data; --48 probably because there are so many trials that don't fall into a GBD category/cause
+select count(distinct nct_id) from public.time_between_submission_and_start_view;--1067
+select count(distinct nct_id) from rank_proximity_to_start_time_view;--1067
+select count(distinct nct_id) from enrollment_closest_to_start_view;--1067
+select count(distinct nct_id) from formatted_data_with_planned_enrollment;--48
+
+
+
+select count(distinct nct_id) from public.view_trial_to_cause; --130
+select count(distinct nct_id) from formatted_data_with_planned_enrollment;--48
+
+
+--get durations and count snapshots per trial per trial
+with cte1 as (
+select 
+    nct_id, 
+    start_date , 
+    primary_completion_date, 
+    overall_status ,
+    primary_completion_date - start_date as duration
+from ctgov.studies s 
+where nct_id in (select distinct nct_id from http.download_status ds)
+), cte2 as (
+select nct_id,count(*) as snapshot_count from formatted_data_with_planned_enrollment fdwpe
+group by nct_id
+)
+select a.nct_id, a.overall_status, a.duration,b.snapshot_count
+from cte1 as a
+    join cte2 as b
+        on a.nct_id=b.nct_id
+;

Scripts/GroupingTrials.sql

@@ -1,6 +1,7 @@
 select * from "DiseaseBurden".icd10_to_cause itc ;
 select * from "DiseaseBurden".cause c ;
-select
+
+
 
 
 select c.id, count(distinct code)
@@ -11,22 +12,93 @@ group by c.id
 order by c.id
 ;
 
-select count(distinct nct_id) from "DiseaseBurden".trial_to_icd10 tti 
+select tti.approved,count(distinct nct_id) from "DiseaseBurden".trial_to_icd10 tti 
-where tti.approved = 'accepted';
+group by tti.approved;
 
 select nct_id, "condition", ui
 from "DiseaseBurden".trial_to_icd10 tti 
 where tti.approved = 'accepted';
 
+drop  view trial_to_cause;
 
-select tti.nct_id, tti."condition",itc.cause_text 
+---Link trials to their causes
+
+create temp view trial_to_cause as
+select tti.nct_id, tti.ui , tti."condition",itc.cause_text, ch.cause_id, ch."level" 
 from "DiseaseBurden".trial_to_icd10 tti 
     join "DiseaseBurden".icd10_to_cause itc
         on replace(REPLACE(tti.ui,'-',''),'.','') = replace(REPLACE(itc.code ,'-',''),'.','')
+    join "DiseaseBurden".cause_hierarchy  ch
+        on itc.cause_text = ch.cause_name
 where 
     tti.approved = 'accepted'
-    and 
-    itc.cause_text not in ('Non-communicable diseases','Neoplasms','Mental disorders','Other non-communicable diseases')
-group by tti.nct_id , tti."condition" , itc.cause_text 
 order by nct_id 
 ;
+
+select distinct nct_id, count(*), min("level"), max("level")
+from trial_to_cause ttc
+group by nct_id
+;
+
+select nct_id,cause_text,cause_id from trial_to_cause
+where level = 3
+group by nct_id,cause_text,cause_id
+order by cause_id
+;
+
+select cause_id,"condition",cause_text,count(distinct nct_id) as c
+from trial_to_cause
+where level >= 3
+group by cause_id,"condition",cause_text
+--having count(distinct nct_id) > 2
+order by cause_id
+;
+
+with cte as (
+    select 
+        nct_id,
+        max("level") as max_level
+    from trial_to_cause
+    group by nct_id
+), cte2 as (
+    select 
+        ttc.nct_id,
+        ttc.ui,
+        ttc."condition",
+        ttc.cause_text,
+        ttc.cause_id,
+        cte.max_level
+    from trial_to_cause ttc
+        join cte 
+            on cte.nct_id=ttc.nct_id
+    where ttc."level"=cte.max_level
+    group by 
+        ttc.nct_id,
+        ttc.ui,
+        ttc."condition",
+        ttc.cause_text,
+        ttc.cause_id,
+        cte.max_level
+    order by nct_id,ui
+), cte3 as (
+select 
+    nct_id,
+    substring(cte2.ui for 3) as code,
+    cte2."condition",
+    cte2.cause_text,
+    cte2.cause_id,
+    ic.id as category_id,
+    ic.group_name 
+from cte2
+    join "DiseaseBurden".icd10_categories ic 
+        on 
+            substring(cte2.ui for 3) <= ic.end_code
+            and         
+            substring(cte2.ui for 3) >= ic.start_code
+)
+select nct_id, cause_id,category_id
+from cte3
+group by nct_id, cause_id, category_id
+;
+
+

Scripts/TablesAndViews_Public.sql

@@ -0,0 +1,83 @@
+
+drop view if exists public.match_trial_to_marketing_start_date;
+DROP VIEW if exists public.match_trial_to_ndc11;
+drop view if exists public.match_trials_to_bn_in;
+
+drop view if exists history.match_drugs_to_trials;
+DROP TABLE IF EXISTS history.trial_snapshots;
+
+CREATE TABLE IF NOT EXISTS history.trial_snapshots
+(
+    nct_id character varying(15) COLLATE pg_catalog."default" NOT NULL,
+    version integer NOT NULL,
+    submission_date timestamp without time zone,
+    primary_completion_date timestamp without time zone,
+    primary_completion_date_category history.updatable_catetories,
+    start_date timestamp without time zone,
+    start_date_category history.updatable_catetories,
+    completion_date timestamp without time zone,
+    completion_date_category history.updatable_catetories,
+    overall_status history.study_statuses,
+    enrollment integer,
+    enrollment_category history.updatable_catetories,
+    sponsor character varying COLLATE pg_catalog."default",
+    responsible_party character varying COLLATE pg_catalog."default",
+    CONSTRAINT trial_snapshots_pkey PRIMARY KEY (nct_id, version)
+);
+
+
+ALTER TABLE IF EXISTS history.trial_snapshots
+    OWNER to root;
+
+
+CREATE OR REPLACE VIEW history.match_drugs_to_trials
+AS SELECT bi.nct_id,
+    rp.rxcui,
+    rp.propvalue1
+   FROM ctgov.browse_interventions bi
+     JOIN rxnorm_migrated.rxnorm_props rp ON bi.downcase_mesh_term::text = rp.propvalue1::text
+  WHERE rp.propname::text = 'RxNorm Name'::text AND (bi.nct_id::text IN ( SELECT trial_snapshots.nct_id
+           FROM history.trial_snapshots));
+           
+       
+CREATE OR REPLACE VIEW public.match_trials_to_bn_in
+AS WITH trialncts AS (
+         SELECT DISTINCT ts.nct_id
+           FROM history.trial_snapshots ts
+        )
+ SELECT bi.nct_id,
+    bi.downcase_mesh_term,
+    rr.tty2,
+    rr.rxcui2 AS bn_or_in_cui,
+    count(*) AS count
+   FROM ctgov.browse_interventions bi
+     LEFT JOIN rxnorm_migrated.rxnorm_props rp ON bi.downcase_mesh_term::text = rp.propvalue1::text
+     LEFT JOIN rxnorm_migrated.rxnorm_relations rr ON rr.rxcui1 = rp.rxcui
+  WHERE (bi.nct_id::text IN ( SELECT trialncts.nct_id
+           FROM trialncts)) AND bi.mesh_type::text = 'mesh-list'::text AND rp.propname::text = 'Active_ingredient_name'::text AND (rr.tty2 = ANY (ARRAY['BN'::bpchar, 'IN'::bpchar, 'MIN'::bpchar]))
+  GROUP BY bi.nct_id, bi.downcase_mesh_term, rr.tty2, rr.rxcui2
+  ORDER BY bi.nct_id;
+  
+  
+CREATE OR REPLACE VIEW public.match_trial_to_ndc11
+AS SELECT mttbi.nct_id,
+    ah.ndc,
+    count(*) AS count
+   FROM match_trials_to_bn_in mttbi
+     LEFT JOIN rxnorm_migrated.rxnorm_relations rr ON mttbi.bn_or_in_cui = rr.rxcui1
+     LEFT JOIN rxnorm_migrated."ALLNDC_HISTORY" ah ON rr.rxcui2 = ah.rxcui
+  WHERE rr.tty1 = 'BN'::bpchar AND (rr.tty2 = ANY (ARRAY['SBD'::bpchar, 'BPCK'::bpchar])) AND ah.sab::text = 'RXNORM'::text
+  GROUP BY mttbi.nct_id, ah.ndc
+  ORDER BY mttbi.nct_id, ah.ndc;
+  
+  
+CREATE OR REPLACE VIEW public.match_trial_to_marketing_start_date
+AS SELECT mttn.nct_id,
+    n.application_number_or_citation,
+    min(n.marketing_start_date) AS min
+   FROM match_trial_to_ndc11 mttn
+     JOIN spl.nsde n ON mttn.ndc = n.package_ndc11::bpchar
+  WHERE n.product_type::text = 'HUMAN PRESCRIPTION DRUG'::text AND (n.marketing_category::text = ANY (ARRAY['NDA'::character varying, 'ANDA'::character varying, 'BLA'::character varying, 'NDA authorized generic'::character varying, 'NDA AUTHORIZED GENERIC'::character varying]::text[]))
+  GROUP BY mttn.nct_id, n.application_number_or_citation
+  ORDER BY mttn.nct_id;
+  

containers/AACT_downloader/docker-entrypoint-initdb.d/030_HistoricalSchema.sql

@@ -97,6 +97,7 @@ CREATE TABLE IF NOT EXISTS history.trial_snapshots
 (
     nct_id character varying(15) COLLATE pg_catalog."default" NOT NULL,
     version integer NOT NULL,
+    submission_date timestamp NOT NULL,
     primary_completion_date timestamp without time zone,
     primary_completion_date_category history.updatable_catetories,
     start_date timestamp without time zone,
@@ -106,11 +107,21 @@ CREATE TABLE IF NOT EXISTS history.trial_snapshots
     overall_status history.study_statuses,
     enrollment integer,
     enrollment_category history.updatable_catetories,
-    sponsor character varying(255) COLLATE pg_catalog."default",
+    sponsor character varying COLLATE pg_catalog."default",
-    responsible_party character varying(255) COLLATE pg_catalog."default",
+    responsible_party character varying COLLATE pg_catalog."default",
     CONSTRAINT trial_snapshots_pkey PRIMARY KEY (nct_id, version)
 );
 
 
 ALTER TABLE IF EXISTS history.trial_snapshots
     OWNER to root;
+
+
+CREATE OR REPLACE VIEW history.match_drugs_to_trials
+AS SELECT bi.nct_id,
+    rp.rxcui,
+    rp.propvalue1
+   FROM ctgov.browse_interventions bi
+     JOIN rxnorm_migrated.rxnorm_props rp ON bi.downcase_mesh_term::text = rp.propvalue1::text
+  WHERE rp.propname::text = 'RxNorm Name'::text AND (bi.nct_id::text IN ( SELECT trial_snapshots.nct_id
+           FROM history.trial_snapshots));

non-db_data_sources/GBD and ICD-10_(2019 version)/GlobalBurdenDisease/Cause list linked to Icd10/source

@@ -0,0 +1 @@
+https://doi.org/10.6069/GHCW-8955

non-db_data_sources/GBD and ICD-10_(2019 version)/GlobalBurdenDisease/Global Burden of Disease Study 2019 (GBD 2019) Cause, REI, and Location Hierarchies/.~lock.IHME_GBD_2019_CAUSE_HIERARCHY_Y2020M11D25.csv#

@@ -0,0 +1 @@
+,dad,home-pc,03.04.2023 15:13,file:///home/dad/.config/libreoffice/4;

non-db_data_sources/GBD and ICD-10_(2019 version)/GlobalBurdenDisease/Global Burden of Disease Study 2019 (GBD 2019) Cause, REI, and Location Hierarchies/IHME_GBD_2019_CAUSE_HIERARCHY_Y2020M11D25.csv

@@ -0,0 +1,365 @@
+Cause ID,Cause Name,Parent ID,Parent Name,Level,Cause Outline,Sort Order,YLL Only,YLD Only
+294,All causes,294,All causes,0,Total,1,,
+295,"Communicable, maternal, neonatal, and nutritional diseases",294,All causes,1,A,2,,
+955,HIV/AIDS and sexually transmitted infections,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.1,3,,
+298,HIV/AIDS,955,HIV/AIDS and sexually transmitted infections,3,A.1.1,4,,
+948,HIV/AIDS - Drug-susceptible Tuberculosis,298,HIV/AIDS,4,A.1.1.1,5,,
+949,HIV/AIDS - Multidrug-resistant Tuberculosis without extensive drug resistance,298,HIV/AIDS,4,A.1.1.2,6,,
+950,HIV/AIDS - Extensively drug-resistant Tuberculosis,298,HIV/AIDS,4,A.1.1.3,7,,
+300,HIV/AIDS resulting in other diseases,298,HIV/AIDS,4,A.1.1.4,8,,
+393,Sexually transmitted infections excluding HIV,955,HIV/AIDS and sexually transmitted infections,3,A.1.2,9,,
+394,Syphilis,393,Sexually transmitted infections excluding HIV,4,A.1.2.1,10,,
+395,Chlamydial infection,393,Sexually transmitted infections excluding HIV,4,A.1.2.2,11,,
+396,Gonococcal infection,393,Sexually transmitted infections excluding HIV,4,A.1.2.3,12,,
+397,Trichomoniasis,393,Sexually transmitted infections excluding HIV,4,A.1.2.4,13,,X
+398,Genital herpes,393,Sexually transmitted infections excluding HIV,4,A.1.2.5,14,,X
+399,Other sexually transmitted infections,393,Sexually transmitted infections excluding HIV,4,A.1.2.6,15,,
+956,Respiratory infections and tuberculosis,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.2,16,,
+297,Tuberculosis,956,Respiratory infections and tuberculosis,3,A.2.1,17,,
+954,Latent tuberculosis infection,297,Tuberculosis,4,A.2.1.1,18,,X
+934,Drug-susceptible tuberculosis,297,Tuberculosis,4,A.2.1.2,19,,
+946,Multidrug-resistant tuberculosis without extensive drug resistance,297,Tuberculosis,4,A.2.1.3,20,,
+947,Extensively drug-resistant tuberculosis,297,Tuberculosis,4,A.2.1.4,21,,
+322,Lower respiratory infections,956,Respiratory infections and tuberculosis,3,A.2.2,22,,
+328,Upper respiratory infections,956,Respiratory infections and tuberculosis,3,A.2.3,23,,
+329,Otitis media,956,Respiratory infections and tuberculosis,3,A.2.4,24,,
+957,Enteric infections,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.3,25,,
+302,Diarrheal diseases,957,Enteric infections,3,A.3.1,26,,
+958,Typhoid and paratyphoid,957,Enteric infections,3,A.3.2,27,,
+319,Typhoid fever,958,Typhoid and paratyphoid,4,A.3.2.1,28,,
+320,Paratyphoid fever,958,Typhoid and paratyphoid,4,A.3.2.2,29,,
+959,Invasive Non-typhoidal Salmonella (iNTS),957,Enteric infections,3,A.3.3,30,,
+321,Other intestinal infectious diseases,957,Enteric infections,3,A.3.4,31,,
+344,Neglected tropical diseases and malaria,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.4,32,,
+345,Malaria,344,Neglected tropical diseases and malaria,3,A.4.1,33,,
+346,Chagas disease,344,Neglected tropical diseases and malaria,3,A.4.2,34,,
+347,Leishmaniasis,344,Neglected tropical diseases and malaria,3,A.4.3,35,,
+348,Visceral leishmaniasis,347,Leishmaniasis,4,A.4.3.1,36,,
+349,Cutaneous and mucocutaneous leishmaniasis,347,Leishmaniasis,4,A.4.3.2,37,,X
+350,African trypanosomiasis,344,Neglected tropical diseases and malaria,3,A.4.4,38,,
+351,Schistosomiasis,344,Neglected tropical diseases and malaria,3,A.4.5,39,,
+352,Cysticercosis,344,Neglected tropical diseases and malaria,3,A.4.6,40,,
+353,Cystic echinococcosis,344,Neglected tropical diseases and malaria,3,A.4.7,41,,
+354,Lymphatic filariasis,344,Neglected tropical diseases and malaria,3,A.4.8,42,,X
+355,Onchocerciasis,344,Neglected tropical diseases and malaria,3,A.4.9,43,,X
+356,Trachoma,344,Neglected tropical diseases and malaria,3,A.4.10,44,,X
+357,Dengue,344,Neglected tropical diseases and malaria,3,A.4.11,45,,
+358,Yellow fever,344,Neglected tropical diseases and malaria,3,A.4.12,46,,
+359,Rabies,344,Neglected tropical diseases and malaria,3,A.4.13,47,,
+360,Intestinal nematode infections,344,Neglected tropical diseases and malaria,3,A.4.14,48,,
+361,Ascariasis,360,Intestinal nematode infections,4,A.4.14.1,49,,
+362,Trichuriasis,360,Intestinal nematode infections,4,A.4.14.2,50,,X
+363,Hookworm disease,360,Intestinal nematode infections,4,A.4.14.3,51,,X
+364,Food-borne trematodiases,344,Neglected tropical diseases and malaria,3,A.4.15,52,,X
+405,Leprosy,344,Neglected tropical diseases and malaria,3,A.4.16,53,,X
+843,Ebola,344,Neglected tropical diseases and malaria,3,A.4.17,54,,
+935,Zika virus,344,Neglected tropical diseases and malaria,3,A.4.18,55,,
+936,Guinea worm disease,344,Neglected tropical diseases and malaria,3,A.4.19,56,,X
+365,Other neglected tropical diseases,344,Neglected tropical diseases and malaria,3,A.4.20,57,,
+961,Other infectious diseases,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.5,58,,
+332,Meningitis,961,Other infectious diseases,3,A.5.1,59,,
+337,Encephalitis,961,Other infectious diseases,3,A.5.2,60,,
+338,Diphtheria,961,Other infectious diseases,3,A.5.3,61,,
+339,Whooping cough,961,Other infectious diseases,3,A.5.4,62,,
+340,Tetanus,961,Other infectious diseases,3,A.5.5,63,,
+341,Measles,961,Other infectious diseases,3,A.5.6,64,,
+342,Varicella and herpes zoster,961,Other infectious diseases,3,A.5.7,65,,
+400,Acute hepatitis,961,Other infectious diseases,3,A.5.8,66,,
+401,Acute hepatitis A,400,Acute hepatitis,4,A.5.8.1,67,,
+402,Acute hepatitis B,400,Acute hepatitis,4,A.5.8.2,68,,
+403,Acute hepatitis C,400,Acute hepatitis,4,A.5.8.3,69,,
+404,Acute hepatitis E,400,Acute hepatitis,4,A.5.8.4,70,,
+408,Other unspecified infectious diseases,961,Other infectious diseases,3,A.5.9,71,,
+962,Maternal and neonatal disorders,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.6,72,,
+366,Maternal disorders,962,Maternal and neonatal disorders,3,A.6.1,73,,
+367,Maternal hemorrhage,366,Maternal disorders,4,A.6.1.1,74,,
+368,Maternal sepsis and other maternal infections,366,Maternal disorders,4,A.6.1.2,75,,
+369,Maternal hypertensive disorders,366,Maternal disorders,4,A.6.1.3,76,,
+370,Maternal obstructed labor and uterine rupture,366,Maternal disorders,4,A.6.1.4,77,,
+995,Maternal abortion and miscarriage,366,Maternal disorders,4,A.6.1.5,78,,
+374,Ectopic pregnancy,366,Maternal disorders,4,A.6.1.6,79,,
+375,Indirect maternal deaths,366,Maternal disorders,4,A.6.1.7,80,X,
+376,Late maternal deaths,366,Maternal disorders,4,A.6.1.8,81,X,
+741,Maternal deaths aggravated by HIV/AIDS,366,Maternal disorders,4,A.6.1.9,82,X,
+379,Other maternal disorders,366,Maternal disorders,4,A.6.1.10,83,,
+380,Neonatal disorders,962,Maternal and neonatal disorders,3,A.6.2,84,,
+381,Neonatal preterm birth,380,Neonatal disorders,4,A.6.2.1,85,,
+382,Neonatal encephalopathy due to birth asphyxia and trauma,380,Neonatal disorders,4,A.6.2.2,86,,
+383,Neonatal sepsis and other neonatal infections,380,Neonatal disorders,4,A.6.2.3,87,,
+384,Hemolytic disease and other neonatal jaundice,380,Neonatal disorders,4,A.6.2.4,88,,
+385,Other neonatal disorders,380,Neonatal disorders,4,A.6.2.5,89,,
+386,Nutritional deficiencies,295,"Communicable, maternal, neonatal, and nutritional diseases",2,A.7,90,,
+387,Protein-energy malnutrition,386,Nutritional deficiencies,3,A.7.1,91,,
+388,Iodine deficiency,386,Nutritional deficiencies,3,A.7.2,92,,X
+389,Vitamin A deficiency,386,Nutritional deficiencies,3,A.7.3,93,,X
+390,Dietary iron deficiency,386,Nutritional deficiencies,3,A.7.4,94,,X
+391,Other nutritional deficiencies,386,Nutritional deficiencies,3,A.7.5,95,,
+409,Non-communicable diseases,294,All causes,1,B,96,,
+410,Neoplasms,409,Non-communicable diseases,2,B.1,97,,
+444,Lip and oral cavity cancer,410,Neoplasms,3,B.1.1,98,,
+447,Nasopharynx cancer,410,Neoplasms,3,B.1.2,99,,
+450,Other pharynx cancer,410,Neoplasms,3,B.1.3,100,,
+411,Esophageal cancer,410,Neoplasms,3,B.1.4,101,,
+414,Stomach cancer,410,Neoplasms,3,B.1.5,102,,
+441,Colon and rectum cancer,410,Neoplasms,3,B.1.6,103,,
+417,Liver cancer,410,Neoplasms,3,B.1.7,104,,
+418,Liver cancer due to hepatitis B,417,Liver cancer,4,B.1.7.1,105,,
+419,Liver cancer due to hepatitis C,417,Liver cancer,4,B.1.7.2,106,,
+420,Liver cancer due to alcohol use,417,Liver cancer,4,B.1.7.3,107,,
+996,Liver cancer due to NASH,417,Liver cancer,4,B.1.7.4,108,,
+1021,Liver cancer due to other causes,417,Liver cancer,4,B.1.7.5,109,,
+453,Gallbladder and biliary tract cancer,410,Neoplasms,3,B.1.8,110,,
+456,Pancreatic cancer,410,Neoplasms,3,B.1.9,111,,
+423,Larynx cancer,410,Neoplasms,3,B.1.10,112,,
+426,"Tracheal, bronchus, and lung cancer",410,Neoplasms,3,B.1.11,113,,
+459,Malignant skin melanoma,410,Neoplasms,3,B.1.12,114,,
+462,Non-melanoma skin cancer,410,Neoplasms,3,B.1.13,115,,
+849,Non-melanoma skin cancer (squamous-cell carcinoma),462,Non-melanoma skin cancer,4,B.1.13.1,116,,
+850,Non-melanoma skin cancer (basal-cell carcinoma),462,Non-melanoma skin cancer,4,B.1.13.2,117,,X
+429,Breast cancer,410,Neoplasms,3,B.1.14,118,,
+432,Cervical cancer,410,Neoplasms,3,B.1.15,119,,
+435,Uterine cancer,410,Neoplasms,3,B.1.16,120,,
+465,Ovarian cancer,410,Neoplasms,3,B.1.17,121,,
+438,Prostate cancer,410,Neoplasms,3,B.1.18,122,,
+468,Testicular cancer,410,Neoplasms,3,B.1.19,123,,
+471,Kidney cancer,410,Neoplasms,3,B.1.20,124,,
+474,Bladder cancer,410,Neoplasms,3,B.1.21,125,,
+477,Brain and central nervous system cancer,410,Neoplasms,3,B.1.22,126,,
+480,Thyroid cancer,410,Neoplasms,3,B.1.23,127,,
+483,Mesothelioma,410,Neoplasms,3,B.1.24,128,,
+484,Hodgkin lymphoma,410,Neoplasms,3,B.1.25,129,,
+485,Non-Hodgkin lymphoma,410,Neoplasms,3,B.1.26,130,,
+486,Multiple myeloma,410,Neoplasms,3,B.1.27,131,,
+487,Leukemia,410,Neoplasms,3,B.1.28,132,,
+845,Acute lymphoid leukemia,487,Leukemia,4,B.1.28.1,133,,
+846,Chronic lymphoid leukemia,487,Leukemia,4,B.1.28.2,134,,
+847,Acute myeloid leukemia,487,Leukemia,4,B.1.28.3,135,,
+848,Chronic myeloid leukemia,487,Leukemia,4,B.1.28.4,136,,
+943,Other leukemia,487,Leukemia,4,B.1.28.5,137,,
+1022,Other malignant neoplasms,410,Neoplasms,3,B.1.29,138,,
+490,Other neoplasms,410,Neoplasms,3,B.1.30,139,,
+964,"Myelodysplastic, myeloproliferative, and other hematopoietic neoplasms",490,Other neoplasms,4,B.1.30.1,140,,
+965,Benign and in situ intestinal neoplasms,490,Other neoplasms,4,B.1.30.2,141,,X
+966,Benign and in situ cervical and uterine neoplasms,490,Other neoplasms,4,B.1.30.3,142,,X
+967,Other benign and in situ neoplasms,490,Other neoplasms,4,B.1.30.4,143,,X
+491,Cardiovascular diseases,409,Non-communicable diseases,2,B.2,144,,
+492,Rheumatic heart disease,491,Cardiovascular diseases,3,B.2.1,145,,
+493,Ischemic heart disease,491,Cardiovascular diseases,3,B.2.2,146,,
+494,Stroke,491,Cardiovascular diseases,3,B.2.3,147,,
+495,Ischemic stroke,494,Stroke,4,B.2.3.1,148,,
+496,Intracerebral hemorrhage,494,Stroke,4,B.2.3.2,149,,
+497,Subarachnoid hemorrhage,494,Stroke,4,B.2.3.3,150,,
+498,Hypertensive heart disease,491,Cardiovascular diseases,3,B.2.4,151,,
+504,Non-rheumatic valvular heart disease,491,Cardiovascular diseases,3,B.2.5,152,,
+968,Non-rheumatic calcific aortic valve disease,504,Non-rheumatic valvular heart disease,4,B.2.5.1,153,,
+969,Non-rheumatic degenerative mitral valve disease,504,Non-rheumatic valvular heart disease,4,B.2.5.2,154,,
+970,Other non-rheumatic valve diseases,504,Non-rheumatic valvular heart disease,4,B.2.5.3,155,,
+499,Cardiomyopathy and myocarditis,491,Cardiovascular diseases,3,B.2.6,156,,
+942,Myocarditis,499,Cardiomyopathy and myocarditis,4,B.2.6.1,157,,
+938,Alcoholic cardiomyopathy,499,Cardiomyopathy and myocarditis,4,B.2.6.2,158,,
+944,Other cardiomyopathy,499,Cardiomyopathy and myocarditis,4,B.2.6.3,159,,
+500,Atrial fibrillation and flutter,491,Cardiovascular diseases,3,B.2.8,160,,
+501,Aortic aneurysm,491,Cardiovascular diseases,3,B.2.9,161,X,
+502,Peripheral artery disease,491,Cardiovascular diseases,3,B.2.10,162,,
+503,Endocarditis,491,Cardiovascular diseases,3,B.2.11,163,,
+1023,Other cardiovascular and circulatory diseases,491,Cardiovascular diseases,3,B.2.12,164,,
+508,Chronic respiratory diseases,409,Non-communicable diseases,2,B.3,165,,
+509,Chronic obstructive pulmonary disease,508,Chronic respiratory diseases,3,B.3.1,166,,
+510,Pneumoconiosis,508,Chronic respiratory diseases,3,B.3.2,167,,
+511,Silicosis,510,Pneumoconiosis,4,B.3.2.1,168,,
+512,Asbestosis,510,Pneumoconiosis,4,B.3.2.2,169,,
+513,Coal workers pneumoconiosis,510,Pneumoconiosis,4,B.3.2.3,170,,
+514,Other pneumoconiosis,510,Pneumoconiosis,4,B.3.2.4,171,,
+515,Asthma,508,Chronic respiratory diseases,3,B.3.3,172,,
+516,Interstitial lung disease and pulmonary sarcoidosis,508,Chronic respiratory diseases,3,B.3.4,173,,
+520,Other chronic respiratory diseases,508,Chronic respiratory diseases,3,B.3.5,174,,
+526,Digestive diseases,409,Non-communicable diseases,2,B.4,175,,
+521,Cirrhosis and other chronic liver diseases,526,Digestive diseases,3,B.4.1,176,,
+522,Cirrhosis and other chronic liver diseases due to hepatitis B,521,Cirrhosis and other chronic liver diseases,4,B.4.1.1,177,,
+523,Cirrhosis and other chronic liver diseases due to hepatitis C,521,Cirrhosis and other chronic liver diseases,4,B.4.1.2,178,,
+524,Cirrhosis and other chronic liver diseases due to alcohol use,521,Cirrhosis and other chronic liver diseases,4,B.4.1.3,179,,
+971,Cirrhosis and other chronic liver diseases due to NAFLD,521,Cirrhosis and other chronic liver diseases,4,B.4.1.4,180,,
+525,Cirrhosis and other chronic liver diseases due to other causes,521,Cirrhosis and other chronic liver diseases,4,B.4.1.5,181,,
+992,Upper digestive system diseases,526,Digestive diseases,3,B.4.2,182,,
+527,Peptic ulcer disease,992,Upper digestive system diseases,4,B.4.2.1,183,,
+528,Gastritis and duodenitis,992,Upper digestive system diseases,4,B.4.2.2,184,,
+536,Gastroesophageal reflux disease,992,Upper digestive system diseases,4,B.4.2.3,185,,X
+529,Appendicitis,526,Digestive diseases,3,B.4.3,186,,
+530,Paralytic ileus and intestinal obstruction,526,Digestive diseases,3,B.4.4,187,,
+531,"Inguinal, femoral, and abdominal hernia",526,Digestive diseases,3,B.4.5,188,,
+532,Inflammatory bowel disease,526,Digestive diseases,3,B.4.6,189,,
+533,Vascular intestinal disorders,526,Digestive diseases,3,B.4.7,190,,
+534,Gallbladder and biliary diseases,526,Digestive diseases,3,B.4.8,191,,
+535,Pancreatitis,526,Digestive diseases,3,B.4.9,192,,
+541,Other digestive diseases,526,Digestive diseases,3,B.4.10,193,,
+542,Neurological disorders,409,Non-communicable diseases,2,B.5,194,,
+543,Alzheimer's disease and other dementias,542,Neurological disorders,3,B.5.1,195,,
+544,Parkinson's disease,542,Neurological disorders,3,B.5.2,196,,
+545,Idiopathic epilepsy,542,Neurological disorders,3,B.5.3,197,,
+546,Multiple sclerosis,542,Neurological disorders,3,B.5.4,198,,
+554,Motor neuron disease,542,Neurological disorders,3,B.5.5,199,,
+972,Headache disorders,542,Neurological disorders,3,B.5.6,200,,X
+547,Migraine,972,Headache disorders,4,B.5.6.1,201,,X
+548,Tension-type headache,972,Headache disorders,4,B.5.6.2,202,,X
+557,Other neurological disorders,542,Neurological disorders,3,B.5.7,203,,
+558,Mental disorders,409,Non-communicable diseases,2,B.6,204,,
+559,Schizophrenia,558,Mental disorders,3,B.6.1,205,,X
+567,Depressive disorders,558,Mental disorders,3,B.6.2,206,,X
+568,Major depressive disorder,567,Depressive disorders,4,B.6.2.1,207,,X
+569,Dysthymia,567,Depressive disorders,4,B.6.2.2,208,,X
+570,Bipolar disorder,558,Mental disorders,3,B.6.3,209,,X
+571,Anxiety disorders,558,Mental disorders,3,B.6.4,210,,X
+572,Eating disorders,558,Mental disorders,3,B.6.5,211,,
+573,Anorexia nervosa,572,Eating disorders,4,B.6.5.1,212,,
+574,Bulimia nervosa,572,Eating disorders,4,B.6.5.2,213,,
+575,Autism spectrum disorders,558,Mental disorders,3,B.6.6,214,,X
+578,Attention-deficit/hyperactivity disorder,558,Mental disorders,3,B.6.7,215,,X
+579,Conduct disorder,558,Mental disorders,3,B.6.8,216,,X
+582,Idiopathic developmental intellectual disability,558,Mental disorders,3,B.6.9,217,,X
+585,Other mental disorders,558,Mental disorders,3,B.6.10,218,,X
+973,Substance use disorders,409,Non-communicable diseases,2,B.7,219,,
+560,Alcohol use disorders,973,Substance use disorders,3,B.7.1,220,,
+561,Drug use disorders,973,Substance use disorders,3,B.7.2,221,,
+562,Opioid use disorders,561,Drug use disorders,4,B.7.2.1,222,,
+563,Cocaine use disorders,561,Drug use disorders,4,B.7.2.2,223,,
+564,Amphetamine use disorders,561,Drug use disorders,4,B.7.2.3,224,,
+565,Cannabis use disorders,561,Drug use disorders,4,B.7.2.4,225,,X
+566,Other drug use disorders,561,Drug use disorders,4,B.7.2.5,226,,
+974,Diabetes and kidney diseases,409,Non-communicable diseases,2,B.8,227,,
+587,Diabetes mellitus,974,Diabetes and kidney diseases,3,B.8.1,228,,
+975,Diabetes mellitus type 1,587,Diabetes mellitus,4,B.8.1.1,229,,
+976,Diabetes mellitus type 2,587,Diabetes mellitus,4,B.8.1.2,230,,
+589,Chronic kidney disease,974,Diabetes and kidney diseases,3,B.8.2,231,,
+997,Chronic kidney disease due to diabetes mellitus type 1,589,Chronic kidney disease,4,B.8.2.1,232,,
+998,Chronic kidney disease due to diabetes mellitus type 2,589,Chronic kidney disease,4,B.8.2.2,233,,
+591,Chronic kidney disease due to hypertension,589,Chronic kidney disease,4,B.8.2.3,234,,
+592,Chronic kidney disease due to glomerulonephritis,589,Chronic kidney disease,4,B.8.2.4,235,,
+593,Chronic kidney disease due to other and unspecified causes,589,Chronic kidney disease,4,B.8.2.5,236,,
+588,Acute glomerulonephritis,974,Diabetes and kidney diseases,3,B.8.3,237,,
+653,Skin and subcutaneous diseases,409,Non-communicable diseases,2,B.9,238,,
+654,Dermatitis,653,Skin and subcutaneous diseases,3,B.9.1,239,,X
+977,Atopic dermatitis,654,Dermatitis,4,B.9.1.1,240,,X
+978,Contact dermatitis,654,Dermatitis,4,B.9.1.2,241,,X
+979,Seborrhoeic dermatitis,654,Dermatitis,4,B.9.1.3,242,,X
+655,Psoriasis,653,Skin and subcutaneous diseases,3,B.9.2,243,,X
+980,Bacterial skin diseases,653,Skin and subcutaneous diseases,3,B.9.3,244,,
+656,Cellulitis,980,Bacterial skin diseases,4,B.9.3.1,245,,
+657,Pyoderma,980,Bacterial skin diseases,4,B.9.3.2,246,,
+658,Scabies,653,Skin and subcutaneous diseases,3,B.9.4,247,,X
+659,Fungal skin diseases,653,Skin and subcutaneous diseases,3,B.9.5,248,,X
+660,Viral skin diseases,653,Skin and subcutaneous diseases,3,B.9.6,249,,X
+661,Acne vulgaris,653,Skin and subcutaneous diseases,3,B.9.7,250,,X
+662,Alopecia areata,653,Skin and subcutaneous diseases,3,B.9.8,251,,X
+663,Pruritus,653,Skin and subcutaneous diseases,3,B.9.9,252,,X
+664,Urticaria,653,Skin and subcutaneous diseases,3,B.9.10,253,,X
+665,Decubitus ulcer,653,Skin and subcutaneous diseases,3,B.9.11,254,,
+668,Other skin and subcutaneous diseases,653,Skin and subcutaneous diseases,3,B.9.12,255,,
+669,Sense organ diseases,409,Non-communicable diseases,2,B.10,256,,X
+981,Blindness and vision loss,669,Sense organ diseases,3,B.10.1,257,,X
+670,Glaucoma,981,Blindness and vision loss,4,B.10.1.1,258,,X
+671,Cataract,981,Blindness and vision loss,4,B.10.1.2,259,,X
+672,Age-related macular degeneration,981,Blindness and vision loss,4,B.10.1.3,260,,X
+999,Refraction disorders,981,Blindness and vision loss,4,B.10.1.4,261,,X
+1000,Near vision loss,981,Blindness and vision loss,4,B.10.1.5,262,,X
+675,Other vision loss,981,Blindness and vision loss,4,B.10.1.6,263,,X
+674,Age-related and other hearing loss,669,Sense organ diseases,3,B.10.2,264,,X
+679,Other sense organ diseases,669,Sense organ diseases,3,B.10.3,265,,X
+626,Musculoskeletal disorders,409,Non-communicable diseases,2,B.11,266,,
+627,Rheumatoid arthritis,626,Musculoskeletal disorders,3,B.11.1,267,,
+628,Osteoarthritis,626,Musculoskeletal disorders,3,B.11.2,268,,X
+1014,Osteoarthritis hip,628,Osteoarthritis,4,B.11.2.1,269,,X
+1015,Osteoarthritis knee,628,Osteoarthritis,4,B.11.2.2,270,,X
+1016,Osteoarthritis hand,628,Osteoarthritis,4,B.11.2.3,271,,X
+1017,Osteoarthritis other,628,Osteoarthritis,4,B.11.2.4,272,,X
+630,Low back pain,626,Musculoskeletal disorders,3,B.11.3,273,,X
+631,Neck pain,626,Musculoskeletal disorders,3,B.11.4,274,,X
+632,Gout,626,Musculoskeletal disorders,3,B.11.5,275,,X
+639,Other musculoskeletal disorders,626,Musculoskeletal disorders,3,B.11.6,276,,
+640,Other non-communicable diseases,409,Non-communicable diseases,2,B.12,277,,
+641,Congenital birth defects,640,Other non-communicable diseases,3,B.12.1,278,,
+642,Neural tube defects,641,Congenital birth defects,4,B.12.1.1,279,,
+643,Congenital heart anomalies,641,Congenital birth defects,4,B.12.1.2,280,,
+644,Orofacial clefts,641,Congenital birth defects,4,B.12.1.3,281,,
+645,Down syndrome,641,Congenital birth defects,4,B.12.1.4,282,,
+646,Turner syndrome,641,Congenital birth defects,4,B.12.1.5,283,,X
+647,Klinefelter syndrome,641,Congenital birth defects,4,B.12.1.6,284,,X
+648,Other chromosomal abnormalities,641,Congenital birth defects,4,B.12.1.7,285,,
+649,Congenital musculoskeletal and limb anomalies,641,Congenital birth defects,4,B.12.1.8,286,,
+650,Urogenital congenital anomalies,641,Congenital birth defects,4,B.12.1.9,287,,
+651,Digestive congenital anomalies,641,Congenital birth defects,4,B.12.1.10,288,,
+652,Other congenital birth defects,641,Congenital birth defects,4,B.12.1.11,289,,
+594,Urinary diseases and male infertility,640,Other non-communicable diseases,3,B.12.2,290,,
+595,Urinary tract infections and interstitial nephritis,594,Urinary diseases and male infertility,4,B.12.2.1,291,,
+596,Urolithiasis,594,Urinary diseases and male infertility,4,B.12.2.2,292,,
+597,Benign prostatic hyperplasia,594,Urinary diseases and male infertility,4,B.12.2.3,293,,X
+598,Male infertility,594,Urinary diseases and male infertility,4,B.12.2.4,294,,X
+602,Other urinary diseases,594,Urinary diseases and male infertility,4,B.12.2.5,295,,
+603,Gynecological diseases,640,Other non-communicable diseases,3,B.12.3,296,,
+604,Uterine fibroids,603,Gynecological diseases,4,B.12.3.1,297,,
+605,Polycystic ovarian syndrome,603,Gynecological diseases,4,B.12.3.2,298,,X
+606,Female infertility,603,Gynecological diseases,4,B.12.3.3,299,,X
+607,Endometriosis,603,Gynecological diseases,4,B.12.3.4,300,,
+608,Genital prolapse,603,Gynecological diseases,4,B.12.3.5,301,,
+609,Premenstrual syndrome,603,Gynecological diseases,4,B.12.3.6,302,,X
+612,Other gynecological diseases,603,Gynecological diseases,4,B.12.3.7,303,,
+613,Hemoglobinopathies and hemolytic anemias,640,Other non-communicable diseases,3,B.12.4,304,,
+614,Thalassemias,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.1,305,,
+837,Thalassemias trait,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.2,306,,X
+615,Sickle cell disorders,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.3,307,,
+838,Sickle cell trait,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.4,308,,X
+616,G6PD deficiency,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.5,309,,
+839,G6PD trait,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.6,310,,X
+618,Other hemoglobinopathies and hemolytic anemias,613,Hemoglobinopathies and hemolytic anemias,4,B.12.4.7,311,,
+619,"Endocrine, metabolic, blood, and immune disorders",640,Other non-communicable diseases,3,B.12.5,312,,
+680,Oral disorders,640,Other non-communicable diseases,3,B.12.6,313,,X
+681,Caries of deciduous teeth,680,Oral disorders,4,B.12.6.1,314,,X
+682,Caries of permanent teeth,680,Oral disorders,4,B.12.6.2,315,,X
+683,Periodontal diseases,680,Oral disorders,4,B.12.6.3,316,,X
+684,Edentulism,680,Oral disorders,4,B.12.6.4,317,,X
+685,Other oral disorders,680,Oral disorders,4,B.12.6.5,318,,X
+686,Sudden infant death syndrome,640,Other non-communicable diseases,3,B.12.7,319,X,
+687,Injuries,294,All causes,1,C,320,,
+688,Transport injuries,687,Injuries,2,C.1,321,,
+689,Road injuries,688,Transport injuries,3,C.1.1,322,,
+690,Pedestrian road injuries,689,Road injuries,4,C.1.1.1,323,,
+691,Cyclist road injuries,689,Road injuries,4,C.1.1.2,324,,
+692,Motorcyclist road injuries,689,Road injuries,4,C.1.1.3,325,,
+693,Motor vehicle road injuries,689,Road injuries,4,C.1.1.4,326,,
+694,Other road injuries,689,Road injuries,4,C.1.1.5,327,,
+695,Other transport injuries,688,Transport injuries,3,C.1.2,328,,
+696,Unintentional injuries,687,Injuries,2,C.2,329,,
+697,Falls,696,Unintentional injuries,3,C.2.1,330,,
+698,Drowning,696,Unintentional injuries,3,C.2.2,331,,
+699,"Fire, heat, and hot substances",696,Unintentional injuries,3,C.2.3,332,,
+700,Poisonings,696,Unintentional injuries,3,C.2.4,333,,
+701,Poisoning by carbon monoxide,700,Poisonings,4,C.2.4.1,334,,
+703,Poisoning by other means,700,Poisonings,4,C.2.4.2,335,,
+704,Exposure to mechanical forces,696,Unintentional injuries,3,C.2.5,336,,
+705,Unintentional firearm injuries,704,Exposure to mechanical forces,4,C.2.5.1,337,,
+707,Other exposure to mechanical forces,704,Exposure to mechanical forces,4,C.2.5.2,338,,
+708,Adverse effects of medical treatment,696,Unintentional injuries,3,C.2.6,339,,
+709,Animal contact,696,Unintentional injuries,3,C.2.7,340,,
+710,Venomous animal contact,709,Animal contact,4,C.2.7.1,341,,
+711,Non-venomous animal contact,709,Animal contact,4,C.2.7.2,342,,
+712,Foreign body,696,Unintentional injuries,3,C.2.8,343,,
+713,Pulmonary aspiration and foreign body in airway,712,Foreign body,4,C.2.8.1,344,,
+714,Foreign body in eyes,712,Foreign body,4,C.2.8.2,345,,X
+715,Foreign body in other body part,712,Foreign body,4,C.2.8.3,346,,
+842,Environmental heat and cold exposure,696,Unintentional injuries,3,C.2.9,347,,
+729,Exposure to forces of nature,696,Unintentional injuries,3,C.2.10,348,,
+716,Other unintentional injuries,696,Unintentional injuries,3,C.2.11,349,,
+717,Self-harm and interpersonal violence,687,Injuries,2,C.3,350,,
+718,Self-harm,717,Self-harm and interpersonal violence,3,C.3.1,351,,
+721,Self-harm by firearm,718,Self-harm,4,C.3.1.1,352,,
+723,Self-harm by other specified means,718,Self-harm,4,C.3.1.2,353,,
+724,Interpersonal violence,717,Self-harm and interpersonal violence,3,C.3.2,354,,
+725,Physical violence by firearm,724,Interpersonal violence,4,C.3.2.1,355,,
+726,Physical violence by sharp object,724,Interpersonal violence,4,C.3.2.2,356,,
+941,Sexual violence,724,Interpersonal violence,4,C.3.2.3,357,,X
+727,Physical violence by other means,724,Interpersonal violence,4,C.3.2.4,358,,
+945,Conflict and terrorism,717,Self-harm and interpersonal violence,3,C.3.3,359,,
+854,Executions and police conflict,717,Self-harm and interpersonal violence,3,C.3.4,360,,
+1029,Total cancers,294,All causes,1,D,361,,
+1026,Total burden related to hepatitis B,294,All causes,1,E,362,,
+1027,Total burden related to hepatitis C,294,All causes,1,F,363,,
+1028,Total burden related to Non-alcoholic fatty liver disease (NAFLD),294,All causes,1,G,364,,

non-db_data_sources/GBD and ICD-10_(2019 version)/GlobalBurdenDisease/Global Burden of Disease Study 2019 (GBD 2019) Cause, REI, and Location Hierarchies/source

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+https://doi.org/10.6069/Q0YC-CR46

non-db_data_sources/GBD and ICD-10_(2019 version)/WHO ICD-10 (2019)/.~lock.icd10-2019_categories_with_chapter.psv#

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+,dad,home-pc,06.04.2023 22:41,file:///home/dad/.config/libreoffice/4;

non-db_data_sources/GBD and ICD-10_(2019 version)/WHO ICD-10 (2019)/icd10-2019_categories_with_chapter.psv

@@ -0,0 +1,248 @@
+"Level"|"Chapter"|"chapter_code"|"start_code"|"end_code"|"group_name"
+1|"I Certain infectious and parasitic diseases  "|1|" A00 "|" B99  "|"I Certain infectious and parasitic diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" A00 "|" A09  "|" Intestinal infectious diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" A15 "|" A19  "|" Tuberculosis  "
+2|"I Certain infectious and parasitic diseases  "|1|" A20 "|" A28  "|" Certain zoonotic bacterial diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" A30 "|" A49  "|" Other bacterial diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" A50 "|" A64  "|" Infections with a predominantly sexual mode of transmission  "
+2|"I Certain infectious and parasitic diseases  "|1|" A65 "|" A69  "|" Other spirochaetal diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" A70 "|" A74  "|" Other diseases caused by chlamydiae  "
+2|"I Certain infectious and parasitic diseases  "|1|" A75 "|" A79  "|" Rickettsioses  "
+2|"I Certain infectious and parasitic diseases  "|1|" A80 "|" A89  "|" Viral infections of the central nervous system  "
+2|"I Certain infectious and parasitic diseases  "|1|" A92 "|" A99  "|" Arthropod-borne viral fevers and viral haemorrhagic fevers  "
+2|"I Certain infectious and parasitic diseases  "|1|" B00 "|" B09  "|" Viral infections characterized by skin and mucous membrane lesions  "
+2|"I Certain infectious and parasitic diseases  "|1|" B15 "|" B19  "|" Viral hepatitis  "
+2|"I Certain infectious and parasitic diseases  "|1|" B20 "|" B24  "|" Human immunodeficiency virus [HIV] disease  "
+2|"I Certain infectious and parasitic diseases  "|1|" B25 "|" B34  "|" Other viral diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" B35 "|" B49  "|" Mycoses  "
+2|"I Certain infectious and parasitic diseases  "|1|" B50 "|" B64  "|" Protozoal diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" B65 "|" B83  "|" Helminthiases  "
+2|"I Certain infectious and parasitic diseases  "|1|" B85 "|" B89  "|" Pediculosis, acariasis and other infestations  "
+2|"I Certain infectious and parasitic diseases  "|1|" B90 "|" B94  "|" Sequelae of infectious and parasitic diseases  "
+2|"I Certain infectious and parasitic diseases  "|1|" B95 "|" B98  "|" Bacterial, viral and other infectious agents  "
+2|"I Certain infectious and parasitic diseases  "|1|" B99 "|" B99  "|" Other infectious diseases  "
+1|"II Neoplasms  "|2|" C00 "|" D48  "|"II Neoplasms  "
+2|"II Neoplasms  "|2|" C00 "|" C14  "|" Malignant neoplasms of lip, oral cavity and pharynx  "
+2|"II Neoplasms  "|2|" C15 "|" C26  "|" Malignant neoplasms of digestive organs  "
+2|"II Neoplasms  "|2|" C30 "|" C39  "|" Malignant neoplasms of respiratory and intrathoracic organs  "
+2|"II Neoplasms  "|2|" C40 "|" C41  "|" Malignant neoplasms of bone and articular cartilage  "
+2|"II Neoplasms  "|2|" C43 "|" C44  "|" Melanoma and other malignant neoplasms of skin  "
+2|"II Neoplasms  "|2|" C45 "|" C49  "|" Malignant neoplasms of mesothelial and soft tissue  "
+2|"II Neoplasms  "|2|" C50 "|" C50  "|" Malignant neoplasm of breast  "
+2|"II Neoplasms  "|2|" C51 "|" C58  "|" Malignant neoplasms of female genital organs  "
+2|"II Neoplasms  "|2|" C60 "|" C63  "|" Malignant neoplasms of male genital organs  "
+2|"II Neoplasms  "|2|" C64 "|" C68  "|" Malignant neoplasms of urinary tract  "
+2|"II Neoplasms  "|2|" C69 "|" C72  "|" Malignant neoplasms of eye, brain and other parts of central nervous system  "
+2|"II Neoplasms  "|2|" C73 "|" C75  "|" Malignant neoplasms of thyroid and other endocrine glands  "
+2|"II Neoplasms  "|2|" C76 "|" C80  "|" Malignant neoplasms of ill-defined, secondary and unspecified sites  "
+2|"II Neoplasms  "|2|" C81 "|" C96  "|" Malignant neoplasms, stated or presumed to be primary, of lymphoid, haematopoietic and related tissue  "
+2|"II Neoplasms  "|2|" C97 "|" C97  "|" Malignant neoplasms of independent (primary) multiple sites  "
+2|"II Neoplasms  "|2|" D00 "|" D09  "|" In situ neoplasms  "
+2|"II Neoplasms  "|2|" D10 "|" D36  "|" Benign neoplasms  "
+2|"II Neoplasms  "|2|" D37 "|" D48  "|" Neoplasms of uncertain or unknown behaviour  "
+1|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D50 "|" D89  "|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "
+2|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D50 "|" D53  "|" Nutritional anaemias  "
+2|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D55 "|" D59  "|" Haemolytic anaemias  "
+2|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D60 "|" D64  "|" Aplastic and other anaemias  "
+2|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D65 "|" D69  "|" Coagulation defects, purpura and other haemorrhagic conditions  "
+2|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D70 "|" D77  "|" Other diseases of blood and blood-forming organs  "
+2|"III Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism  "|3|" D80 "|" D89  "|" Certain disorders involving the immune mechanism  "
+1|"IV Endocrine, nutritional and metabolic diseases  "|4|" E00 "|" E90  "|"IV Endocrine, nutritional and metabolic diseases  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E00 "|" E07  "|" Disorders of thyroid gland  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E10 "|" E14  "|" Diabetes mellitus  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E15 "|" E16  "|" Other disorders of glucose regulation and pancreatic internal secretion  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E20 "|" E35  "|" Disorders of other endocrine glands  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E40 "|" E46  "|" Malnutrition  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E50 "|" E64  "|" Other nutritional deficiencies  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E65 "|" E68  "|" Obesity and other hyperalimentation  "
+2|"IV Endocrine, nutritional and metabolic diseases  "|4|" E70 "|" E90  "|" Metabolic disorders  "
+1|"V Mental and behavioural disorders  "|5|" F00 "|" F99  "|"V Mental and behavioural disorders  "
+2|"V Mental and behavioural disorders  "|5|" F00 "|" F09  "|" Organic, including symptomatic, mental disorders  "
+2|"V Mental and behavioural disorders  "|5|" F10 "|" F19  "|" Mental and behavioural disorders due to psychoactive substance use  "
+2|"V Mental and behavioural disorders  "|5|" F20 "|" F29  "|" Schizophrenia, schizotypal and delusional disorders  "
+2|"V Mental and behavioural disorders  "|5|" F30 "|" F39  "|" Mood [affective] disorders  "
+2|"V Mental and behavioural disorders  "|5|" F40 "|" F48  "|" Neurotic, stress-related and somatoform disorders  "
+2|"V Mental and behavioural disorders  "|5|" F50 "|" F59  "|" Behavioural syndromes associated with physiological disturbances and physical factors  "
+2|"V Mental and behavioural disorders  "|5|" F60 "|" F69  "|" Disorders of adult personality and behaviour  "
+2|"V Mental and behavioural disorders  "|5|" F70 "|" F79  "|" Mental retardation  "
+2|"V Mental and behavioural disorders  "|5|" F80 "|" F89  "|" Disorders of psychological development  "
+2|"V Mental and behavioural disorders  "|5|" F90 "|" F98  "|" Behavioural and emotional disorders with onset usually occurring in childhood and adolescence  "
+2|"V Mental and behavioural disorders  "|5|" F99 "|" F99  "|" Unspecified mental disorder  "
+1|"VI Diseases of the nervous system  "|6|" G00 "|" G99  "|"VI Diseases of the nervous system  "
+2|"VI Diseases of the nervous system  "|6|" G00 "|" G09  "|" Inflammatory diseases of the central nervous system  "
+2|"VI Diseases of the nervous system  "|6|" G10 "|" G14  "|" Systemic atrophies primarily affecting the central nervous system  "
+2|"VI Diseases of the nervous system  "|6|" G20 "|" G26  "|" Extrapyramidal and movement disorders  "
+2|"VI Diseases of the nervous system  "|6|" G30 "|" G32  "|" Other degenerative diseases of the nervous system  "
+2|"VI Diseases of the nervous system  "|6|" G35 "|" G37  "|" Demyelinating diseases of the central nervous system  "
+2|"VI Diseases of the nervous system  "|6|" G40 "|" G47  "|" Episodic and paroxysmal disorders  "
+2|"VI Diseases of the nervous system  "|6|" G50 "|" G59  "|" Nerve, nerve root and plexus disorders  "
+2|"VI Diseases of the nervous system  "|6|" G60 "|" G64  "|" Polyneuropathies and other disorders of the peripheral nervous system  "
+2|"VI Diseases of the nervous system  "|6|" G70 "|" G73  "|" Diseases of myoneural junction and muscle  "
+2|"VI Diseases of the nervous system  "|6|" G80 "|" G83  "|" Cerebral palsy and other paralytic syndromes  "
+2|"VI Diseases of the nervous system  "|6|" G90 "|" G99  "|" Other disorders of the nervous system  "
+1|"VII Diseases of the eye and adnexa  "|7|" H00 "|" H59  "|"VII Diseases of the eye and adnexa  "
+2|"VII Diseases of the eye and adnexa  "|7|" H00 "|" H06  "|" Disorders of eyelid, lacrimal system and orbit  "
+2|"VII Diseases of the eye and adnexa  "|7|" H10 "|" H13  "|" Disorders of conjunctiva  "
+2|"VII Diseases of the eye and adnexa  "|7|" H15 "|" H22  "|" Disorders of sclera, cornea, iris and ciliary body  "
+2|"VII Diseases of the eye and adnexa  "|7|" H25 "|" H28  "|" Disorders of lens  "
+2|"VII Diseases of the eye and adnexa  "|7|" H30 "|" H36  "|" Disorders of choroid and retina  "
+2|"VII Diseases of the eye and adnexa  "|7|" H40 "|" H42  "|" Glaucoma  "
+2|"VII Diseases of the eye and adnexa  "|7|" H43 "|" H45  "|" Disorders of vitreous body and globe  "
+2|"VII Diseases of the eye and adnexa  "|7|" H46 "|" H48  "|" Disorders of optic nerve and visual pathways  "
+2|"VII Diseases of the eye and adnexa  "|7|" H49 "|" H52  "|" Disorders of ocular muscles, binocular movement, accommodation and refraction  "
+2|"VII Diseases of the eye and adnexa  "|7|" H53 "|" H54  "|" Visual disturbances and blindness  "
+2|"VII Diseases of the eye and adnexa  "|7|" H55 "|" H59  "|" Other disorders of eye and adnexa  "
+1|"VIII Diseases of the ear and mastoid process  "|8|" H60 "|" H95  "|"VIII Diseases of the ear and mastoid process  "
+2|"VIII Diseases of the ear and mastoid process  "|8|" H60 "|" H62  "|" Diseases of external ear  "
+2|"VIII Diseases of the ear and mastoid process  "|8|" H65 "|" H75  "|" Diseases of middle ear and mastoid  "
+2|"VIII Diseases of the ear and mastoid process  "|8|" H80 "|" H83  "|" Diseases of inner ear  "
+2|"VIII Diseases of the ear and mastoid process  "|8|" H90 "|" H95  "|" Other disorders of ear  "
+1|"IX Diseases of the circulatory system  "|9|" I00 "|" I99  "|"IX Diseases of the circulatory system  "
+2|"IX Diseases of the circulatory system  "|9|" I00 "|" I02  "|" Acute rheumatic fever  "
+2|"IX Diseases of the circulatory system  "|9|" I05 "|" I09  "|" Chronic rheumatic heart diseases  "
+2|"IX Diseases of the circulatory system  "|9|" I10 "|" I15  "|" Hypertensive diseases  "
+2|"IX Diseases of the circulatory system  "|9|" I20 "|" I25  "|" Ischaemic heart diseases  "
+2|"IX Diseases of the circulatory system  "|9|" I26 "|" I28  "|" Pulmonary heart disease and diseases of pulmonary circulation  "
+2|"IX Diseases of the circulatory system  "|9|" I30 "|" I52  "|" Other forms of heart disease  "
+2|"IX Diseases of the circulatory system  "|9|" I60 "|" I69  "|" Cerebrovascular diseases  "
+2|"IX Diseases of the circulatory system  "|9|" I70 "|" I79  "|" Diseases of arteries, arterioles and capillaries  "
+2|"IX Diseases of the circulatory system  "|9|" I80 "|" I89  "|" Diseases of veins, lymphatic vessels and lymph nodes, not elsewhere classified  "
+2|"IX Diseases of the circulatory system  "|9|" I95 "|" I99  "|" Other and unspecified disorders of the circulatory system  "
+1|"X Diseases of the respiratory system  "|10|" J00 "|" J99  "|"X Diseases of the respiratory system  "
+2|"X Diseases of the respiratory system  "|10|" J00 "|" J06  "|" Acute upper respiratory infections  "
+2|"X Diseases of the respiratory system  "|10|" J09 "|" J18  "|" Influenza and pneumonia  "
+2|"X Diseases of the respiratory system  "|10|" J20 "|" J22  "|" Other acute lower respiratory infections  "
+2|"X Diseases of the respiratory system  "|10|" J30 "|" J39  "|" Other diseases of upper respiratory tract  "
+2|"X Diseases of the respiratory system  "|10|" J40 "|" J47  "|" Chronic lower respiratory diseases  "
+2|"X Diseases of the respiratory system  "|10|" J60 "|" J70  "|" Lung diseases due to external agents  "
+2|"X Diseases of the respiratory system  "|10|" J80 "|" J84  "|" Other respiratory diseases principally affecting the interstitium  "
+2|"X Diseases of the respiratory system  "|10|" J85 "|" J86  "|" Suppurative and necrotic conditions of lower respiratory tract  "
+2|"X Diseases of the respiratory system  "|10|" J90 "|" J94  "|" Other diseases of pleura  "
+2|"X Diseases of the respiratory system  "|10|" J95 "|" J99  "|" Other diseases of the respiratory system  "
+1|"XI Diseases of the digestive system  "|11|" K00 "|" K93  "|"XI Diseases of the digestive system  "
+2|"XI Diseases of the digestive system  "|11|" K00 "|" K14  "|" Diseases of oral cavity, salivary glands and jaws  "
+2|"XI Diseases of the digestive system  "|11|" K20 "|" K31  "|" Diseases of oesophagus, stomach and duodenum  "
+2|"XI Diseases of the digestive system  "|11|" K35 "|" K38  "|" Diseases of appendix  "
+2|"XI Diseases of the digestive system  "|11|" K40 "|" K46  "|" Hernia  "
+2|"XI Diseases of the digestive system  "|11|" K50 "|" K52  "|" Noninfective enteritis and colitis  "
+2|"XI Diseases of the digestive system  "|11|" K55 "|" K64  "|" Other diseases of intestines  "
+2|"XI Diseases of the digestive system  "|11|" K65 "|" K67  "|" Diseases of peritoneum  "
+2|"XI Diseases of the digestive system  "|11|" K70 "|" K77  "|" Diseases of liver  "
+2|"XI Diseases of the digestive system  "|11|" K80 "|" K87  "|" Disorders of gallbladder, biliary tract and pancreas  "
+2|"XI Diseases of the digestive system  "|11|" K90 "|" K93  "|" Other diseases of the digestive system  "
+1|"XII Diseases of the skin and subcutaneous tissue  "|12|" L00 "|" L99  "|"XII Diseases of the skin and subcutaneous tissue  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L00 "|" L08  "|" Infections of the skin and subcutaneous tissue  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L10 "|" L14  "|" Bullous disorders  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L20 "|" L30  "|" Dermatitis and eczema  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L40 "|" L45  "|" Papulosquamous disorders  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L50 "|" L54  "|" Urticaria and erythema  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L55 "|" L59  "|" Radiation-related disorders of the skin and subcutaneous tissue  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L60 "|" L75  "|" Disorders of skin appendages  "
+2|"XII Diseases of the skin and subcutaneous tissue  "|12|" L80 "|" L99  "|" Other disorders of the skin and subcutaneous tissue  "
+1|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M00 "|" M99  "|"XIII Diseases of the musculoskeletal system and connective tissue  "
+2|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M00 "|" M25  "|" Arthropathies  "
+2|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M30 "|" M36  "|" Systemic connective tissue disorders  "
+2|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M40 "|" M54  "|" Dorsopathies  "
+2|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M60 "|" M79  "|" Soft tissue disorders  "
+2|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M80 "|" M94  "|" Osteopathies and chondropathies  "
+2|"XIII Diseases of the musculoskeletal system and connective tissue  "|13|" M95 "|" M99  "|" Other disorders of the musculoskeletal system and connective tissue  "
+1|"XIV Diseases of the genitourinary system  "|14|" N00 "|" N99  "|"XIV Diseases of the genitourinary system  "
+2|"XIV Diseases of the genitourinary system  "|14|" N00 "|" N08  "|" Glomerular diseases  "
+2|"XIV Diseases of the genitourinary system  "|14|" N10 "|" N16  "|" Renal tubulo-interstitial diseases  "
+2|"XIV Diseases of the genitourinary system  "|14|" N17 "|" N19  "|" Renal failure  "
+2|"XIV Diseases of the genitourinary system  "|14|" N20 "|" N23  "|" Urolithiasis  "
+2|"XIV Diseases of the genitourinary system  "|14|" N25 "|" N29  "|" Other disorders of kidney and ureter  "
+2|"XIV Diseases of the genitourinary system  "|14|" N30 "|" N39  "|" Other diseases of urinary system  "
+2|"XIV Diseases of the genitourinary system  "|14|" N40 "|" N51  "|" Diseases of male genital organs  "
+2|"XIV Diseases of the genitourinary system  "|14|" N60 "|" N64  "|" Disorders of breast  "
+2|"XIV Diseases of the genitourinary system  "|14|" N70 "|" N77  "|" Inflammatory diseases of female pelvic organs  "
+2|"XIV Diseases of the genitourinary system  "|14|" N80 "|" N98  "|" Noninflammatory disorders of female genital tract  "
+2|"XIV Diseases of the genitourinary system  "|14|" N99 "|" N99  "|" Other disorders of the genitourinary system  "
+1|"XV Pregnancy, childbirth and the puerperium  "|15|" O00 "|" O99  "|"XV Pregnancy, childbirth and the puerperium  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O00 "|" O08  "|" Pregnancy with abortive outcome  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O10 "|" O16  "|" Oedema, proteinuria and hypertensive disorders in pregnancy, childbirth and the puerperium  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O20 "|" O29  "|" Other maternal disorders predominantly related to pregnancy  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O30 "|" O48  "|" Maternal care related to the fetus and amniotic cavity and possible delivery problems  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O60 "|" O75  "|" Complications of labour and delivery  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O80 "|" O84  "|" Delivery  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O85 "|" O92  "|" Complications predominantly related to the puerperium  "
+2|"XV Pregnancy, childbirth and the puerperium  "|15|" O94 "|" O99  "|" Other obstetric conditions, not elsewhere classified  "
+1|"XVI Certain conditions originating in the perinatal period  "|16|" P00 "|" P96  "|"XVI Certain conditions originating in the perinatal period  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P00 "|" P04  "|" Fetus and newborn affected by maternal factors and by complications of pregnancy, labour and delivery  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P05 "|" P08  "|" Disorders related to length of gestation and fetal growth  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P10 "|" P15  "|" Birth trauma  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P20 "|" P29  "|" Respiratory and cardiovascular disorders specific to the perinatal period  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P35 "|" P39  "|" Infections specific to the perinatal period  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P50 "|" P61  "|" Haemorrhagic and haematological disorders of fetus and newborn  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P70 "|" P74  "|" Transitory endocrine and metabolic disorders specific to fetus and newborn  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P75 "|" P78  "|" Digestive system disorders of fetus and newborn  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P80 "|" P83  "|" Conditions involving the integument and temperature regulation of fetus and newborn  "
+2|"XVI Certain conditions originating in the perinatal period  "|16|" P90 "|" P96  "|" Other disorders originating in the perinatal period  "
+1|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q00 "|" Q99  "|"XVII Congenital malformations, deformations and chromosomal abnormalities  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q00 "|" Q07  "|" Congenital malformations of the nervous system  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q10 "|" Q18  "|" Congenital malformations of eye, ear, face and neck  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q20 "|" Q28  "|" Congenital malformations of the circulatory system  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q30 "|" Q34  "|" Congenital malformations of the respiratory system  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q35 "|" Q37  "|" Cleft lip and cleft palate  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q38 "|" Q45  "|" Other congenital malformations of the digestive system  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q50 "|" Q56  "|" Congenital malformations of genital organs  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q60 "|" Q64  "|" Congenital malformations of the urinary system  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q65 "|" Q79  "|" Congenital malformations and deformations of the musculoskeletal system  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q80 "|" Q89  "|" Other congenital malformations  "
+2|"XVII Congenital malformations, deformations and chromosomal abnormalities  "|17|" Q90 "|" Q99  "|" Chromosomal abnormalities, not elsewhere classified  "
+1|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R00 "|" R99  "|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R00 "|" R09  "|" Symptoms and signs involving the circulatory and respiratory systems  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R10 "|" R19  "|" Symptoms and signs involving the digestive system and abdomen  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R20 "|" R23  "|" Symptoms and signs involving the skin and subcutaneous tissue  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R25 "|" R29  "|" Symptoms and signs involving the nervous and musculoskeletal systems  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R30 "|" R39  "|" Symptoms and signs involving the urinary system  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R40 "|" R46  "|" Symptoms and signs involving cognition, perception, emotional state and behaviour  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R47 "|" R49  "|" Symptoms and signs involving speech and voice  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R50 "|" R69  "|" General symptoms and signs  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R70 "|" R79  "|" Abnormal findings on examination of blood, without diagnosis  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R80 "|" R82  "|" Abnormal findings on examination of urine, without diagnosis  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R83 "|" R89  "|" Abnormal findings on examination of other body fluids, substances and tissues, without diagnosis  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R90 "|" R94  "|" Abnormal findings on diagnostic imaging and in function studies, without diagnosis  "
+2|"XVIII Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified  "|18|" R95 "|" R99  "|" Ill-defined and unknown causes of mortality  "
+1|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S00 "|" T98  "|"XIX Injury, poisoning and certain other consequences of external causes  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S00 "|" S09  "|" Injuries to the head  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S10 "|" S19  "|" Injuries to the neck  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S20 "|" S29  "|" Injuries to the thorax  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S30 "|" S39  "|" Injuries to the abdomen, lower back, lumbar spine and pelvis  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S40 "|" S49  "|" Injuries to the shoulder and upper arm  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S50 "|" S59  "|" Injuries to the elbow and forearm  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S60 "|" S69  "|" Injuries to the wrist and hand  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S70 "|" S79  "|" Injuries to the hip and thigh  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S80 "|" S89  "|" Injuries to the knee and lower leg  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" S90 "|" S99  "|" Injuries to the ankle and foot  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T00 "|" T07  "|" Injuries involving multiple body regions  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T08 "|" T14  "|" Injuries to unspecified part of trunk, limb or body region  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T15 "|" T19  "|" Effects of foreign body entering through natural orifice  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T20 "|" T32  "|" Burns and corrosions  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T33 "|" T35  "|" Frostbite  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T36 "|" T50  "|" Poisoning by drugs, medicaments and biological substances  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T51 "|" T65  "|" Toxic effects of substances chiefly nonmedicinal as to source  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T66 "|" T78  "|" Other and unspecified effects of external causes  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T79 "|" T79  "|" Certain early complications of trauma  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T80 "|" T88  "|" Complications of surgical and medical care, not elsewhere classified  "
+2|"XIX Injury, poisoning and certain other consequences of external causes  "|19|" T90 "|" T98  "|" Sequelae of injuries, of poisoning and of other consequences of external causes  "
+1|"XX External causes of morbidity and mortality  "|20|" V01 "|" Y98  "|"XX External causes of morbidity and mortality  "
+2|"XX External causes of morbidity and mortality  "|20|" V01 "|" X59  "|" Accidents  "
+2|"XX External causes of morbidity and mortality  "|20|" X60 "|" X84  "|" Intentional self-harm  "
+2|"XX External causes of morbidity and mortality  "|20|" X85 "|" Y09  "|" Assault  "
+2|"XX External causes of morbidity and mortality  "|20|" Y10 "|" Y34  "|" Event of undetermined intent  "
+2|"XX External causes of morbidity and mortality  "|20|" Y35 "|" Y36  "|" Legal intervention and operations of war  "
+2|"XX External causes of morbidity and mortality  "|20|" Y40 "|" Y84  "|" Complications of medical and surgical care  "
+2|"XX External causes of morbidity and mortality  "|20|" Y85 "|" Y89  "|" Sequelae of external causes of morbidity and mortality  "
+2|"XX External causes of morbidity and mortality  "|20|" Y90 "|" Y98  "|" Supplementary factors related to causes of morbidity and mortality classified elsewhere  "
+1|"XXI Factors influencing health status and contact with health services  "|21|" Z00 "|" Z99  "|"XXI Factors influencing health status and contact with health services  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z00 "|" Z13  "|" Persons encountering health services for examination and investigation  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z20 "|" Z29  "|" Persons with potential health hazards related to communicable diseases  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z30 "|" Z39  "|" Persons encountering health services in circumstances related to reproduction  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z40 "|" Z54  "|" Persons encountering health services for specific procedures and health care  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z55 "|" Z65  "|" Persons with potential health hazards related to socioeconomic and psychosocial circumstances  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z70 "|" Z76  "|" Persons encountering health services in other circumstances  "
+2|"XXI Factors influencing health status and contact with health services  "|21|" Z80 "|" Z99  "|" Persons with potential health hazards related to family and personal history and certain conditions influencing health status  "
+1|"XXII Codes for special purposes  "|22|" U00 "|" U85  "|"XXII Codes for special purposes  "
+2|"XXII Codes for special purposes  "|22|" U00 "|" U49  "|" Provisional assignment of new diseases of uncertain etiology or emergency use  "
+2|"XXII Codes for special purposes  "|22|" U82 "|" U85  "|" Resistance to antimicrobial and antineoplastic drugs   "

non-db_data_sources/GBD and ICD-10_(2019 version)/WHO ICD-10 (2019)/icd10_categories.txt

@@ -0,0 +1,225 @@
+A00 | A09 | Intestinal infectious diseases  
+A15 | A19 | Tuberculosis  
+A20 | A28 | Certain zoonotic bacterial diseases  
+A30 | A49 | Other bacterial diseases  
+A50 | A64 | Infections with a predominantly sexual mode of transmission  
+A65 | A69 | Other spirochaetal diseases  
+A70 | A74 | Other diseases caused by chlamydiae  
+A75 | A79 | Rickettsioses  
+A80 | A89 | Viral infections of the central nervous system  
+A92 | A99 | Arthropod-borne viral fevers and viral haemorrhagic fevers  
+B00 | B09 | Viral infections characterized by skin and mucous membrane lesions  
+B15 | B19 | Viral hepatitis  
+B20 | B24 | Human immunodeficiency virus [HIV] disease  
+B25 | B34 | Other viral diseases  
+B35 | B49 | Mycoses  
+B50 | B64 | Protozoal diseases  
+B65 | B83 | Helminthiases  
+B85 | B89 | Pediculosis, acariasis and other infestations  
+B90 | B94 | Sequelae of infectious and parasitic diseases  
+B95 | B98 | Bacterial, viral and other infectious agents  
+B99 | B99 | Other infectious diseases  
+C00 | C14 | Malignant neoplasms of lip, oral cavity and pharynx  
+C15 | C26 | Malignant neoplasms of digestive organs  
+C30 | C39 | Malignant neoplasms of respiratory and intrathoracic organs  
+C40 | C41 | Malignant neoplasms of bone and articular cartilage  
+C43 | C44 | Melanoma and other malignant neoplasms of skin  
+C45 | C49 | Malignant neoplasms of mesothelial and soft tissue  
+C50 | C50 | Malignant neoplasm of breast  
+C51 | C58 | Malignant neoplasms of female genital organs  
+C60 | C63 | Malignant neoplasms of male genital organs  
+C64 | C68 | Malignant neoplasms of urinary tract  
+C69 | C72 | Malignant neoplasms of eye, brain and other parts of central nervous system  
+C73 | C75 | Malignant neoplasms of thyroid and other endocrine glands  
+C76 | C80 | Malignant neoplasms of ill-defined, secondary and unspecified sites  
+C81 | C96 | Malignant neoplasms, stated or presumed to be primary, of lymphoid, haematopoietic and related tissue  
+C97 | C97 | Malignant neoplasms of independent (primary) multiple sites  
+D00 | D09 | In situ neoplasms  
+D10 | D36 | Benign neoplasms  
+D37 | D48 | Neoplasms of uncertain or unknown behaviour  
+D50 | D53 | Nutritional anaemias  
+D55 | D59 | Haemolytic anaemias  
+D60 | D64 | Aplastic and other anaemias  
+D65 | D69 | Coagulation defects, purpura and other haemorrhagic conditions  
+D70 | D77 | Other diseases of blood and blood-forming organs  
+D80 | D89 | Certain disorders involving the immune mechanism  
+E00 | E07 | Disorders of thyroid gland  
+E10 | E14 | Diabetes mellitus  
+E15 | E16 | Other disorders of glucose regulation and pancreatic internal secretion  
+E20 | E35 | Disorders of other endocrine glands  
+E40 | E46 | Malnutrition  
+E50 | E64 | Other nutritional deficiencies  
+E65 | E68 | Obesity and other hyperalimentation  
+E70 | E90 | Metabolic disorders  
+F00 | F09 | Organic, including symptomatic, mental disorders  
+F10 | F19 | Mental and behavioural disorders due to psychoactive substance use  
+F20 | F29 | Schizophrenia, schizotypal and delusional disorders  
+F30 | F39 | Mood [affective] disorders  
+F40 | F48 | Neurotic, stress-related and somatoform disorders  
+F50 | F59 | Behavioural syndromes associated with physiological disturbances and physical factors  
+F60 | F69 | Disorders of adult personality and behaviour  
+F70 | F79 | Mental retardation  
+F80 | F89 | Disorders of psychological development  
+F90 | F98 | Behavioural and emotional disorders with onset usually occurring in childhood and adolescence  
+F99 | F99 | Unspecified mental disorder  
+G00 | G09 | Inflammatory diseases of the central nervous system  
+G10 | G14 | Systemic atrophies primarily affecting the central nervous system  
+G20 | G26 | Extrapyramidal and movement disorders  
+G30 | G32 | Other degenerative diseases of the nervous system  
+G35 | G37 | Demyelinating diseases of the central nervous system  
+G40 | G47 | Episodic and paroxysmal disorders  
+G50 | G59 | Nerve, nerve root and plexus disorders  
+G60 | G64 | Polyneuropathies and other disorders of the peripheral nervous system  
+G70 | G73 | Diseases of myoneural junction and muscle  
+G80 | G83 | Cerebral palsy and other paralytic syndromes  
+G90 | G99 | Other disorders of the nervous system  
+H00 | H06 | Disorders of eyelid, lacrimal system and orbit  
+H10 | H13 | Disorders of conjunctiva  
+H15 | H22 | Disorders of sclera, cornea, iris and ciliary body  
+H25 | H28 | Disorders of lens  
+H30 | H36 | Disorders of choroid and retina  
+H40 | H42 | Glaucoma  
+H43 | H45 | Disorders of vitreous body and globe  
+H46 | H48 | Disorders of optic nerve and visual pathways  
+H49 | H52 | Disorders of ocular muscles, binocular movement, accommodation and refraction  
+H53 | H54 | Visual disturbances and blindness  
+H55 | H59 | Other disorders of eye and adnexa  
+H60 | H62 | Diseases of external ear  
+H65 | H75 | Diseases of middle ear and mastoid  
+H80 | H83 | Diseases of inner ear  
+H90 | H95 | Other disorders of ear  
+I00 | I02 | Acute rheumatic fever  
+I05 | I09 | Chronic rheumatic heart diseases  
+I10 | I15 | Hypertensive diseases  
+I20 | I25 | Ischaemic heart diseases  
+I26 | I28 | Pulmonary heart disease and diseases of pulmonary circulation  
+I30 | I52 | Other forms of heart disease  
+I60 | I69 | Cerebrovascular diseases  
+I70 | I79 | Diseases of arteries, arterioles and capillaries  
+I80 | I89 | Diseases of veins, lymphatic vessels and lymph nodes, not elsewhere classified  
+I95 | I99 | Other and unspecified disorders of the circulatory system  
+J00 | J06 | Acute upper respiratory infections  
+J09 | J18 | Influenza and pneumonia  
+J20 | J22 | Other acute lower respiratory infections  
+J30 | J39 | Other diseases of upper respiratory tract  
+J40 | J47 | Chronic lower respiratory diseases  
+J60 | J70 | Lung diseases due to external agents  
+J80 | J84 | Other respiratory diseases principally affecting the interstitium  
+J85 | J86 | Suppurative and necrotic conditions of lower respiratory tract  
+J90 | J94 | Other diseases of pleura  
+J95 | J99 | Other diseases of the respiratory system  
+K00 | K14 | Diseases of oral cavity, salivary glands and jaws  
+K20 | K31 | Diseases of oesophagus, stomach and duodenum  
+K35 | K38 | Diseases of appendix  
+K40 | K46 | Hernia  
+K50 | K52 | Noninfective enteritis and colitis  
+K55 | K64 | Other diseases of intestines  
+K65 | K67 | Diseases of peritoneum  
+K70 | K77 | Diseases of liver  
+K80 | K87 | Disorders of gallbladder, biliary tract and pancreas  
+K90 | K93 | Other diseases of the digestive system  
+L00 | L08 | Infections of the skin and subcutaneous tissue  
+L10 | L14 | Bullous disorders  
+L20 | L30 | Dermatitis and eczema  
+L40 | L45 | Papulosquamous disorders  
+L50 | L54 | Urticaria and erythema  
+L55 | L59 | Radiation-related disorders of the skin and subcutaneous tissue  
+L60 | L75 | Disorders of skin appendages  
+L80 | L99 | Other disorders of the skin and subcutaneous tissue  
+M00 | M25 | Arthropathies  
+M30 | M36 | Systemic connective tissue disorders  
+M40 | M54 | Dorsopathies  
+M60 | M79 | Soft tissue disorders  
+M80 | M94 | Osteopathies and chondropathies  
+M95 | M99 | Other disorders of the musculoskeletal system and connective tissue  
+N00 | N08 | Glomerular diseases  
+N10 | N16 | Renal tubulo-interstitial diseases  
+N17 | N19 | Renal failure  
+N20 | N23 | Urolithiasis  
+N25 | N29 | Other disorders of kidney and ureter  
+N30 | N39 | Other diseases of urinary system  
+N40 | N51 | Diseases of male genital organs  
+N60 | N64 | Disorders of breast  
+N70 | N77 | Inflammatory diseases of female pelvic organs  
+N80 | N98 | Noninflammatory disorders of female genital tract  
+N99 | N99 | Other disorders of the genitourinary system  
+O00 | O08 | Pregnancy with abortive outcome  
+O10 | O16 | Oedema, proteinuria and hypertensive disorders in pregnancy, childbirth and the puerperium  
+O20 | O29 | Other maternal disorders predominantly related to pregnancy  
+O30 | O48 | Maternal care related to the fetus and amniotic cavity and possible delivery problems  
+O60 | O75 | Complications of labour and delivery  
+O80 | O84 | Delivery  
+O85 | O92 | Complications predominantly related to the puerperium  
+O94 | O99 | Other obstetric conditions, not elsewhere classified  
+P00 | P04 | Fetus and newborn affected by maternal factors and by complications of pregnancy, labour and delivery  
+P05 | P08 | Disorders related to length of gestation and fetal growth  
+P10 | P15 | Birth trauma  
+P20 | P29 | Respiratory and cardiovascular disorders specific to the perinatal period  
+P35 | P39 | Infections specific to the perinatal period  
+P50 | P61 | Haemorrhagic and haematological disorders of fetus and newborn  
+P70 | P74 | Transitory endocrine and metabolic disorders specific to fetus and newborn  
+P75 | P78 | Digestive system disorders of fetus and newborn  
+P80 | P83 | Conditions involving the integument and temperature regulation of fetus and newborn  
+P90 | P96 | Other disorders originating in the perinatal period  
+Q00 | Q07 | Congenital malformations of the nervous system  
+Q10 | Q18 | Congenital malformations of eye, ear, face and neck  
+Q20 | Q28 | Congenital malformations of the circulatory system  
+Q30 | Q34 | Congenital malformations of the respiratory system  
+Q35 | Q37 | Cleft lip and cleft palate  
+Q38 | Q45 | Other congenital malformations of the digestive system  
+Q50 | Q56 | Congenital malformations of genital organs  
+Q60 | Q64 | Congenital malformations of the urinary system  
+Q65 | Q79 | Congenital malformations and deformations of the musculoskeletal system  
+Q80 | Q89 | Other congenital malformations  
+Q90 | Q99 | Chromosomal abnormalities, not elsewhere classified  
+R00 | R09 | Symptoms and signs involving the circulatory and respiratory systems  
+R10 | R19 | Symptoms and signs involving the digestive system and abdomen  
+R20 | R23 | Symptoms and signs involving the skin and subcutaneous tissue  
+R25 | R29 | Symptoms and signs involving the nervous and musculoskeletal systems  
+R30 | R39 | Symptoms and signs involving the urinary system  
+R40 | R46 | Symptoms and signs involving cognition, perception, emotional state and behaviour  
+R47 | R49 | Symptoms and signs involving speech and voice  
+R50 | R69 | General symptoms and signs  
+R70 | R79 | Abnormal findings on examination of blood, without diagnosis  
+R80 | R82 | Abnormal findings on examination of urine, without diagnosis  
+R83 | R89 | Abnormal findings on examination of other body fluids, substances and tissues, without diagnosis  
+R90 | R94 | Abnormal findings on diagnostic imaging and in function studies, without diagnosis  
+R95 | R99 | Ill-defined and unknown causes of mortality  
+S00 | S09 | Injuries to the head  
+S10 | S19 | Injuries to the neck  
+S20 | S29 | Injuries to the thorax  
+S30 | S39 | Injuries to the abdomen, lower back, lumbar spine and pelvis  
+S40 | S49 | Injuries to the shoulder and upper arm  
+S50 | S59 | Injuries to the elbow and forearm  
+S60 | S69 | Injuries to the wrist and hand  
+S70 | S79 | Injuries to the hip and thigh  
+S80 | S89 | Injuries to the knee and lower leg  
+S90 | S99 | Injuries to the ankle and foot  
+T00 | T07 | Injuries involving multiple body regions  
+T08 | T14 | Injuries to unspecified part of trunk, limb or body region  
+T15 | T19 | Effects of foreign body entering through natural orifice  
+T20 | T32 | Burns and corrosions  
+T33 | T35 | Frostbite  
+T36 | T50 | Poisoning by drugs, medicaments and biological substances  
+T51 | T65 | Toxic effects of substances chiefly nonmedicinal as to source  
+T66 | T78 | Other and unspecified effects of external causes  
+T79 | T79 | Certain early complications of trauma  
+T80 | T88 | Complications of surgical and medical care, not elsewhere classified  
+T90 | T98 | Sequelae of injuries, of poisoning and of other consequences of external causes  
+V01 | X59 | Accidents  
+X60 | X84 | Intentional self-harm  
+X85 | Y09 | Assault  
+Y10 | Y34 | Event of undetermined intent  
+Y35 | Y36 | Legal intervention and operations of war  
+Y40 | Y84 | Complications of medical and surgical care  
+Y85 | Y89 | Sequelae of external causes of morbidity and mortality  
+Y90 | Y98 | Supplementary factors related to causes of morbidity and mortality classified elsewhere  
+Z00 | Z13 | Persons encountering health services for examination and investigation  
+Z20 | Z29 | Persons with potential health hazards related to communicable diseases  
+Z30 | Z39 | Persons encountering health services in circumstances related to reproduction  
+Z40 | Z54 | Persons encountering health services for specific procedures and health care  
+Z55 | Z65 | Persons with potential health hazards related to socioeconomic and psychosocial circumstances  
+Z70 | Z76 | Persons encountering health services in other circumstances  
+Z80 | Z99 | Persons with potential health hazards related to family and personal history and certain conditions influencing health status  
+U00 | U49 | Provisional assignment of new diseases of uncertain etiology or emergency use  
+U82 | U85 | Resistance to antimicrobial and antineoplastic drugs   

scripts/umls_requests.py

@@ -40,7 +40,25 @@ with postgres_conn() as pconn, pconn.cursor(cursor_factory=extras.DictCursor) as
     order by nct_id
     ;
     """
-    pcurse.execute(sql)
+    sql2 = """
+    with cte as (
+    /* Keywords added too much noise
+        select nct_id,downcase_name 
+        from ctgov.keywords k 
+        where nct_id in (select distinct nct_id from history.trial_snapshots ts)
+        union */
+        select nct_id, downcase_name  
+        from ctgov.conditions c 
+        union 
+        select nct_id ,downcase_mesh_term  as downcase_name
+        from ctgov.browse_conditions bc  
+        where mesh_type = 'mesh-list'
+    )
+    select nct_id, downcase_name  from cte
+    where nct_id in (select distinct nct_id from history.trial_snapshots ts)
+    order by nct_id 
+    """
+    pcurse.execute(sql2)
     rows = pcurse.fetchall()
 
     entries = []