moved containers to single location, ignored raw data

llm-extraction
youainti 3 years ago
parent f6f687fff5
commit 1a106a553e

9
.gitignore vendored

@ -180,9 +180,12 @@ Manifest.toml
###### Custom ##### ###### Custom #####
aact_downloads/
NCT*.html NCT*.html
/Orangebook/EOBZIP_*/
/Orangebook/Orangebooks/
*.json *.json
*.zip *.zip
#Ignore stuff from RxNavInABox
containers/RxNav-In-a-box/rxnav_data/*
containers/RxNav-In-a-box/rxnav-in-a-box-*
#Ignore stuff from AACT_downlaoder
containers/db_store/*

@ -1,16 +0,0 @@
{
// Use IntelliSense to learn about possible attributes.
// Hover to view descriptions of existing attributes.
// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
"version": "0.2.0",
"configurations": [
{
"name": "Python: Current File",
"type": "python",
"request": "launch",
"program": "${file}",
"console": "integratedTerminal",
"justMyCode": true
}
]
}

@ -0,0 +1,15 @@
version: '3.1'
services:
rxnav-db:
image: mariadb:10.4
restart: "no"
expose:
- "3306"
volumes:
- ./rxnav-in-a-box/mysql:/docker-entrypoint-initdb.d:ro
- ./rxnav_data:/
environment:
MYSQL_RANDOM_ROOT_PASSWORD: "yes"
MYSQL_USER: webuser
MYSQL_PASSWORD: 9521354c77aa

@ -0,0 +1,7 @@
# Instructions:
Go go [RxNavInABox](https://lhncbc.nlm.nih.gov/RxNav/applications/RxNav-in-a-Box.html) and download the most recent version.
I have included the version I use.
Then unzip and run docker-compose.yaml
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