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ClinicalTrialsEstimation/r-analysis/basic_logit.stan

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//
// This Stan program defines a simple model, with a
// vector of values 'y' modeled as normally distributed
// with mean 'mu' and standard deviation 'sigma'.
//
// Learn more about model development with Stan at:
//
// http://mc-stan.org/users/interfaces/rstan.html
// https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started
//
// The input data is a vector 'y' of length 'N'.
data {
int<lower=0> N;
int<lower=0> k;
matrix[N,k] X;
vector[N] int<lower=0, upper=1> y;
}
// The parameters accepted by the model. Our model
// accepts two parameters 'mu' and 'sigma'.
parameters {
vector[k] beta;
}
// The model to be estimated. We model the output
// 'y' to be normally distributed with mean 'mu'
// and standard deviation 'sigma'.
model {
y ~ bernoulli_logit( X * beta);
}