This is used to build tools which process and standardize data.

You cannot select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.

Go to file

youainti 3eb9a4130a Got parsing updated to new format		3 years ago
AACT_downloader	Added history schema, got extraction_lib to read and write from db	3 years ago
Orangebook	justfile will download, create, and populate db with AACT data	3 years ago
Parser	Got parsing updated to new format	3 years ago
assorted	Reorganized folder system. added an assorted section to help keep track of useful sql etc.	4 years ago
classifications	justfile will download, create, and populate db with AACT data	3 years ago
history_downloader	Got the historical downloader working (fixed an sql issue) and setup tools to select trials.	3 years ago
.gitignore	Added a justfile, adjusted docker networks, restructured how data is downloaded	3 years ago
README.md	Added history schema, got extraction_lib to read and write from db	3 years ago
data-graph	added graph of data linkages	4 years ago
justfile	Added history schema, got extraction_lib to read and write from db	3 years ago

ClinicalTrialsDataProcessing

This represents my

Prerequisites

Python >= 3.10 (requires match statement) Docker >= 20.10 Curl >= 7 Just >= 1.9

Check prerequisites

just check-status

Setup the underlying AACT database including downloading historical data.

just create
just select-trials

finish advanced usage add a section describing networking