From ef7ed7001bfbf7a18bfebb343ad9d7c5ec71952f Mon Sep 17 00:00:00 2001
From: will king <youainti@protonmail.com>
Date: Fri, 10 Mar 2023 15:32:11 -0800
Subject: [PATCH] added info for setting up the db from DrugCentral.org

---
 .dbeaver/.credentials-config.json.bak      | Bin 224 -> 240 bytes
 .dbeaver/.data-sources.json.bak            |  27 ++++++++++-----------
 .dbeaver/.project-metadata.json.bak        |   2 +-
 .gitignore                                 |   4 +++
 containers/drugcentral/docker-compose.yaml |  23 ++++++++++++++++++
 containers/drugcentral/init.sh             |   9 +++++++
 development_sql/Script.sql                 |   0
 7 files changed, 50 insertions(+), 15 deletions(-)
 create mode 100644 containers/drugcentral/docker-compose.yaml
 create mode 100755 containers/drugcentral/init.sh
 create mode 100644 development_sql/Script.sql

diff --git a/.dbeaver/.credentials-config.json.bak b/.dbeaver/.credentials-config.json.bak
index 5d48b6cece9cff94519361a25e23137e02b39008..2d11c2b429ba9d2b06535274604532287cfd7f5e 100644
GIT binary patch
literal 240
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z^!!FA7s_c)V}D}S^4Pd)h6fl+e%3=lxo+l`KwV8DJKCqGHxQzf1t+_HGmkMkyx_fI
zWg)w(uh;b>H_T3C<$uX5VOPcAHS_K&c;$W1<=N}GRc@I<>d7cRsghiWz|&QqEv*bW
z;j$JYHPVw`Kt2~BcPw3?u68manJh_wZa~-;n}{g1?dfl1%naA#+b&n>>IP-i>SKP%
qb(wkfhATPbIFA#xrk`lyVrKjaD5lQ0Ps)(u9JuJtvBh*!KlA=zJbHQn

literal 224
zcmV<603ZJ!Rn!U~;qc#pj2QT{ZhBT-oH(@+2-ouOpwvk&kh>!(9}Prj3t{5JVb<CV
z@LJl=fz5y#UeY-m5()8${Q+K5b@M}MM{Wgt7&?)C?@-$CL4CIlX%Dz1?$cyg4R1`R
zeFat4sWQVDNq#xwAUN*mI!C5$|8M+IAPd54in;{%r5C>00HyRIc5RIEIAE&)qwD5n
zcBT7>oF?>@uS{LYc#ujl&!HXdfgcH{>8xfolql8`Q2Y~mem+UUfskAtP)`QLC?6)f
a-I1kb0&rw_60Cc{B!7L0?ZN1*B)D4&rE4(&

diff --git a/.dbeaver/.data-sources.json.bak b/.dbeaver/.data-sources.json.bak
index 115afe3..b2d156b 100644
--- a/.dbeaver/.data-sources.json.bak
+++ b/.dbeaver/.data-sources.json.bak
@@ -1,31 +1,30 @@
 {
 	"folders": {},
 	"connections": {
-		"postgres-jdbc-186be7b92d8-4d6ef891885b76f5": {
-			"provider": "postgresql",
-			"driver": "postgres-jdbc",
-			"name": "aact_db",
+		"mariaDB-186c896820e-6ff11b5b802d8b82": {
+			"provider": "mysql",
+			"driver": "mariaDB",
+			"name": "rxnav",
 			"save-password": true,
 			"configuration": {
 				"host": "will-office",
-				"port": "5432",
-				"database": "aact_db",
-				"url": "jdbc:postgresql://will-office:5432/aact_db",
+				"port": "3306",
+				"url": "jdbc:mariadb://will-office:3306/",
 				"configurationType": "MANUAL",
 				"type": "dev",
 				"auth-model": "native"
 			}
 		},
-		"mariaDB-186be7ba5a8-7a57b538dcd4188f": {
-			"provider": "mysql",
-			"driver": "mariaDB",
-			"name": "rxnorm_current",
+		"postgres-jdbc-186c896a347-2a3d946d2dea4df7": {
+			"provider": "postgresql",
+			"driver": "postgres-jdbc",
+			"name": "aact_db",
 			"save-password": true,
 			"configuration": {
 				"host": "will-office",
-				"port": "3306",
-				"database": "rxnorm_current",
-				"url": "jdbc:mariadb://will-office:3306/rxnorm_current",
+				"port": "5432",
+				"database": "aact_db",
+				"url": "jdbc:postgresql://will-office:5432/aact_db",
 				"configurationType": "MANUAL",
 				"type": "dev",
 				"auth-model": "native"
diff --git a/.dbeaver/.project-metadata.json.bak b/.dbeaver/.project-metadata.json.bak
index d76f603..9310679 100644
--- a/.dbeaver/.project-metadata.json.bak
+++ b/.dbeaver/.project-metadata.json.bak
@@ -1 +1 @@
-{"resources":{"development_sql/ASSOICATING NCTIDs to NDCs and Marketing dates.sql":{"default-datasource":"postgres-jdbc-186be7b92d8-4d6ef891885b76f5","default-catalog":"aact_db","default-schema":"public"}}}
\ No newline at end of file
+{"resources":{"development_sql/ASSOICATING NCTIDs to NDCs and Marketing dates.sql":{"default-datasource":"postgres-jdbc-186c896a347-2a3d946d2dea4df7","default-catalog":"aact_db","default-schema":"public"}}}
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index 9da644c..0e6b8e4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -189,5 +189,9 @@ containers/RxNav-In-a-box/rxnav-in-a-box-*
 #Ignore stuff from AACT_downlaoder
 containers/AACT_downloader/postgresql/*
 containers/AACT_downloader/aact_downloads/*
+#ignore stuff in DrugCentral Downloader
+containers/drugcentral/docker-entrypoint-initdb.d/*.sql
+containers/drugcentral/docker-entrypoint-initdb.d/*.sql.gz
+containers/drugcentral/db_store/*
 
 
diff --git a/containers/drugcentral/docker-compose.yaml b/containers/drugcentral/docker-compose.yaml
new file mode 100644
index 0000000..9870c73
--- /dev/null
+++ b/containers/drugcentral/docker-compose.yaml
@@ -0,0 +1,23 @@
+version: '3'
+
+networks:
+  pharmaceutical_research: #because it helps to have a way to link specifically to this. 
+
+services:
+  aact_db:
+    image: postgres:14-alpine
+    networks:
+      - pharmaceutical_research
+    container_name: DrugCentral
+    #restart: always #restart after crashes
+    environment:
+      POSTGRES_PASSWORD: root
+    ports:
+      - "54320:5432" #host:container
+    volumes: #host:container is the format.
+      # this is persistant storage for the database  
+      - ./db_store/:/var/lib/postgresql/
+      # this is the folder containing entrypoint info.
+      - ./docker-entrypoint-initdb.d/:/docker-entrypoint-initdb.d/
+
+
diff --git a/containers/drugcentral/init.sh b/containers/drugcentral/init.sh
new file mode 100755
index 0000000..791d337
--- /dev/null
+++ b/containers/drugcentral/init.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+filename="drugcentral.dump.08222022.sql.gz"
+
+cd ./docker-entrypoint-initdb.d/
+
+curl "https://unmtid-shinyapps.net/download/$filename" --output "$filename"
+
+gzip -d $filename
diff --git a/development_sql/Script.sql b/development_sql/Script.sql
new file mode 100644
index 0000000..e69de29