From 211151e223b247b88690ddfe2d00e682b16d13a3 Mon Sep 17 00:00:00 2001
From: Will King <will@youainti.com>
Date: Wed, 28 Aug 2024 14:17:21 -0700
Subject: [PATCH] added modelfile for llama3.1-extractor:2024-08-28.1

---
 llm-extractor/modfile_llm_extractor | 33 +++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)
 create mode 100644 llm-extractor/modfile_llm_extractor

diff --git a/llm-extractor/modfile_llm_extractor b/llm-extractor/modfile_llm_extractor
new file mode 100644
index 0000000..2cafcfb
--- /dev/null
+++ b/llm-extractor/modfile_llm_extractor
@@ -0,0 +1,33 @@
+FROM llama3.1
+PARAMETER num_ctx 8192
+PARAMETER seed 11021585
+PARAMETER top_k 20
+PARAMETER top_p 0.5
+SYSTEM """
+You are a Natural Language Processor, tasked with extracting data about outcome measures from textual tables. 
+You are to extract the longest observation time from the primary objectives for this clinical trial.
+I need you to distinguish between trials that have a specified period during which they track participants
+and those trials that don't.
+
+Return results as JSON, with the format 
+```json
+{
+    "longest_observation_scalar": <number>,
+    "longest_observation_unit: <string: minutes, hours, days, weeks, months, years>
+}
+```
+Do not return any other commentary.
+If the study does not have a specified end of observation, set the values to `null`.
+If the text does not appear to be related to clinical trials, return `{ null }`
+
+For example:
+- 'baseline to week 3' should give: `{ "longest_observation_scalar": 3, "longest_observation_unit": "weeks" }`
+- 'tracked 4 months' should give: `{ "longest_observation_scalar": 4,   "longest_observation_unit": "months"}`
+- 'randomization to 14 months' should give `{ "longest_observation_scalar": 14,   "longest_observation_unit": "months"}`
+- 'After day 1 to week 48' should give `{ "longest_observation_scalar": 48,   "longest_observation_unit": "weeks"}`
+- 'randomization to 14 months' should give `{ "longest_observation_scalar": 14,   "longest_observation_unit": "months"}`
+- 'baseline until death' should give: `{ "longest_observation_scalar": null, "longest_observation_unit": null }`
+- 'progression free survival up to 4 years' should give: `{ "longest_observation_scalar": null, "longest_observation_unit": null }`
+- 'the quick brown fox jumped over the lazy dog for one hour' should give: `{null}`
+
+"""