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106 lines
3.6 KiB
Python
106 lines
3.6 KiB
Python
import functools
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from flask import (Blueprint, flash, g, redirect, render_template, request, session, url_for)
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from Icd10ConditionsMatching.db_interface import (
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get_db,select_remaing_trials_to_analyze,
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select_analyzed_trials,
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select_unmatched_trials,
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get_trial_conditions_and_proposed_matches,
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store_validation,
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get_trial_summary,
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get_list_icd10_codes,
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record_suggested_matches,
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)
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from datetime import datetime
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#### First Blueprint: Checking Data
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bp = Blueprint("formularies", __name__, url_prefix="/link/formularies")
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@bp.route("/",methods=["GET"])
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def remaining():
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'''
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TODO: get this to display the lists of trials that need linked
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and those that have already been linked
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Also includ a place for those whos linking has been delayed.
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'''
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#connect to db
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db_conn = get_db()
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#get data of interest
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to_validate = select_remaing_trials_to_analyze(db_conn)
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validated = select_analyzed_trials(db_conn)
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unmatched_list = select_unmatched_trials(db_conn)
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#
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return render_template(
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"validation_index.html",
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list_to_validate=to_validate,
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validated_list = validated,
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unmatched_list = unmatched_list
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)
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@bp.route("/<nct_id>", methods=["GET","POST"])
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def validate_trial(nct_id):
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if request.method == "GET":
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db_conn = get_db()
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condition_list = get_trial_conditions_and_proposed_matches(db_conn, nct_id)
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summary_dats = get_trial_summary(db_conn, nct_id)
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return render_template(
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"validation_of_trial.html",
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nct_id=nct_id,
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condition_list=condition_list,
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summary_dats=summary_dats,
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)
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elif request.method == "POST":
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db_conn = get_db()
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list_of_insert_data = []
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db_conn = get_db()
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condition_list = get_trial_conditions_and_proposed_matches(db_conn, nct_id)
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print(request.form)
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if "submission" in request.form:
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#if it is a submission:
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#grab all match ids from db
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#if match id in submitted form, mark as approved, otherwise mark as rejected
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for condition in condition_list:
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id = condition[0]
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list_of_insert_data.append((request.form.get(str(id),"rejected"), datetime.now(),id))
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store_validation(db_conn, list_of_insert_data)
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return redirect(url_for("validation.remaining"))
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elif "marked_unmatched" in request.form:
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#if this was marked as "unmatched", store that for each entry.
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for condition in condition_list:
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id = condition[0]
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list_of_insert_data.append(( "unmatched", datetime.now(), id))
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store_validation(db_conn, list_of_insert_data)
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return redirect(url_for("validation.remaining"))
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elif "alternate_submission" in request.form:
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code = request.form["alt_sub"]
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code = code.strip().replace(".",'').ljust(7,"-")
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condition = request.form["condition"].strip()
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codelist = get_list_icd10_codes(db_conn)
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if code in codelist:
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record_suggested_matches(db_conn, nct_id, condition, code)
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return redirect(request.path)
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else:
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record_suggested_matches(db_conn, nct_id, condition + "| Code not in GBD list", code)
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return """
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Entered `{}`, which is not in the list of available ICD-10 codes. <a href={}>Return to trial summary</a>
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""".format(code.strip("-"),request.path), 422
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